Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1187 ATGGACGTGCCGAAACACCGCGCCACTCGAACAACGTCTCTCAGGGACGCCTCCGAGTCCTCCAAGATGGAAGGCACCGGTAGCTGGGACGCCATCGAATGGACCAAGATTGAGCCAATTTCGCGCTTCGTCTCTCACGCGAATCTCGATTTCCTGCTCGAGGCGGAGCAAGTTGTAGCCGAAGGACATGGTGTTGTTCTTGTTAACACAGATGATGCGGGCATGCTGATGGTGACGAATTTCCGTCTTATTTTTCTGAGTGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCGGCCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATACTCGTTATGCAGACAAGACGCCAACACAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTATAGTCTTCAGTTTCAGGCCACGTACAAAACAGAGACGTGTGGTATTTGATGCGCTACTGAGGTGTACAAAGCCAGCAAGACTATGGGATCTTTATGCTTTTGCTTCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTATTGGATGAATATTTTCGGCTTCTTTGCTTAGGTTTTCATCGTGCATCAAtcaatataattgaaaatgggTCTTTCACCTTGTCAAATGACCTATGGAGAATAAGTAGCGTGAATTCCAATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTACCTGTAGTTTCATGGTGTCATCCTTTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTCTTATGATGAATATGAGGAGCAACATTGATGAAAAACTCGTGGCTGCGCTTTGCAGCAAACTAGATAATGGCTCAAGGAGAAAGTTATATATTGCTGATGCACGGCCAAGGAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGatAGTCTTTTTGGGGATAGACAACATCCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAAAGCGTCATCGGATGGAATGTCCTCTTTTTTGAGACAAGGAGGGTCAACGTGGGGTGGTGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAGAGTGTGTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCAATAGAAAGCGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACTGGGTTTCAGGCACTCATTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGTCTTCAACTGGCAACTTACCCCCATCACCCATGCGCCAGTCATCAGGAACATTCTCGTCGCAAACCCCAACTTCATCTCACTCGCATAACTCCAACGACTATTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCGCAATTATTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGtgagaAGGAGAGGCAGCAAAGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTGTACTTGGCTGATTTGCGGACATCAGAAGGAGGTTCCCATGTGCATTACAATCCCTTTTATGATCCACTGAAGCATAATGGTCCTCTTCGGCCCCCAGCAGCAGCATTAGCCCCAACTTTGTGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCACAATGCAGGAACATAGTTATGAAATACTCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGGAGAGCTATAGAAGTTACAAGTTCCATAGAGTCATTGAATGCAGAATTACGACGTGAGAAGCAGCTAAACAGCTCAGCTATGAACATGGCCAAGAGTATAAGCAAAGAAAATATGGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACAGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCTAGGAAAGAATCAATTAGTAATGTGCGTGATGACAAAAAGGATCTGTCTGTTTTAGTACCAGTTACAGCAGATGATCATGATGATGATGGAAACAATGCAATTGGTCGGGTATGTGAAACTCTATGCCCATTTCGCTCTGGAGTTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGTCAGTATGTTGGTCTGAAGGCAAATTTTGATGCATTTGACCAATTGTCAATTGATGATAGTTATTTCAAGTCTGAGTGA 2550 0.4455 MDVPKHRATRTTSLRDASESSKMEGTGSWDAIEWTKIEPISRFVSHANLDFLLEAEQVVAEGHGVVLVNTDDAGMLMVTNFRLIFLSEGTRKVIALGTIPLAAIEKFNKIVVKVQSNTRYADKTPTQRLLQVIGKDMRIIVFSFRPRTKQRRVVFDALLRCTKPARLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLCLGFHRASINIIENGSFTLSNDLWRISSVNSNYTMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVVSWCHPLTGAVVARSSQPLVGLMMNMRSNIDEKLVAALCSKLDNGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRESFVRLREYMDTHGKASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAIESASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALIEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQSSTGNLPPSPMRQSSGTFSSQTPTSSHSHNSNDYSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFVDCMLSCRFGNFLCNSEKERQQSNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGPLRPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRNIVMKYSEMQKAKEMAERRAIEVTSSIESLNAELRREKQLNSSAMNMAKSISKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKESISNVRDDKKDLSVLVPVTADDHDDDGNNAIGRVCETLCPFRSGVGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSIDDSYFKSE 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1187 849 ProSiteProfiles Myotubularin phosphatase domain. 201 650 IPR010569 -
Ssu7g1187 849 PANTHER MYOTUBULARIN-RELATED 19 848 IPR030564 -
Ssu7g1187 849 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 848 - -
Ssu7g1187 849 SMART gram2001c 41 111 IPR004182 -
Ssu7g1187 849 Gene3D - 63 162 IPR011993 -
Ssu7g1187 849 Coils Coil 682 716 - -
Ssu7g1187 849 MobiDBLite consensus disorder prediction 503 535 - -
Ssu7g1187 849 MobiDBLite consensus disorder prediction 1 24 - -
Ssu7g1187 849 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Ssu7g1187 849 CDD PTP-MTM-like 261 552 - -
Ssu7g1187 849 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Ssu7g1187 849 SUPERFAMILY PH domain-like 52 174 - -
Ssu7g1187 849 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 207 654 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1187 1 847 Protein tyrosine phosphatase (PTP) family AT3G10550 68.192 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1187 K18081 - gmx:100781842 1575.84