Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1182 ATGGTAAACCAAAGGGTTGAACATGTTATGACAGAAAGgctaaggaaaaagaagaagaggaagaaggaagTTTTGGTTCCTCGTCCTGCATGCTCATGGGTGTATTTTagTAAGGAGTTTATCAAAGAGTACATTGCTTCCCATCCTGAGTCATCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCAAATGCGTGGAAGTCGATGAGTCTTGAAGAGAAGGAAAAGTATGCTAGGTGTGCGGGTGAAGTGTGGGATGGCTACTTGAGTTCGGGTGCTGCCCCTGCCCCAAGCCACGGAAACAACATATCTCTTGAAGGGTCTTCTGCTTCAGTTCCAACTATTGTTCCATATCTGTTTTCCTGGGGAGAGGAGGAGATTGCTGGGAGAGAAAAACGAGAAAAGGAACTTGGTGGATATGGTTCTGGGGAGCTAGCAAGCAAGAAGAGATGCTGTCATATGGAGTTTTCAGACTATAGAGATCATCCAGATGGCCCGCCAATCACCACAGAAAGCACTAGGATTAGGCATGGTCCTCTTCGTAGACCAGAATCAAATGAGGAAGGCATCCTGGATTTTCCCAGGAGTAGAACTGTGTTGAGTGATGTGGATTTAGTAGTTAAATCAATCGAAGCTCCTTGTCGAAACAGAGAATATGGTTGCAATGAAACTGTGGATTACATGACCAGTAACGACCATGAAGTGACATGCATCTGTTCTCCATGTACGTGTCCACTTCAAGACTGCAACTATGTTGGATCATTCGAACAGTTGGCATTGCATTTCAGCAGTAAACACTGGGATTCTGGAAGACGATTCAAATATGATCATCCATTGGCTATCTCTTTACAGACGGATGAGCAATTCCTTGTTCTCCAGGCCGAAGAAGATGGGGTTCTCTTTCTCCTCAACAAGGACACAGAAACTAATGGGAATACAGTGATCATAACCTGTATTGGTCCAAGCTCATCAAAAGGGAGGTTTATTTATGAGATTATTTCGTGTAGGGGAAGAAGTTCTCTCAGATTAAAGTCTGTAGCTGAGATTTTTCCTGGTCGCATGGAGGATTTTCCCCCAGTAGATTTTCTTTTGATTcctttcaattttcttgtttcttctAGGGAGCTCAATATAGATATTTGTATATGGAATTCTACTGAACATAATGTAGATTGCTcttga 1179 0.4105 MVNQRVEHVMTERLRKKKKRKKEVLVPRPACSWVYFSKEFIKEYIASHPESSGLKAATKAASNAWKSMSLEEKEKYARCAGEVWDGYLSSGAAPAPSHGNNISLEGSSASVPTIVPYLFSWGEEEIAGREKREKELGGYGSGELASKKRCCHMEFSDYRDHPDGPPITTESTRIRHGPLRRPESNEEGILDFPRSRTVLSDVDLVVKSIEAPCRNREYGCNETVDYMTSNDHEVTCICSPCTCPLQDCNYVGSFEQLALHFSSKHWDSGRRFKYDHPLAISLQTDEQFLVLQAEEDGVLFLLNKDTETNGNTVIITCIGPSSSKGRFIYEIISCRGRSSLRLKSVAEIFPGRMEDFPPVDFLLIPFNFLVSSRELNIDICIWNSTEHNVDCS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1182 392 SUPERFAMILY HMG-box 11 87 IPR036910 -
Ssu7g1182 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 97 IPR044286 -
Ssu7g1182 392 ProSiteProfiles Zinc finger SIAH-type profile. 208 266 IPR013010 GO:0008270
Ssu7g1182 392 Gene3D High mobility group box domain 11 88 IPR036910 -
Ssu7g1182 392 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 26 76 IPR009071 -
Ssu7g1182 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 124 391 IPR044286 -
Ssu7g1182 392 MobiDBLite consensus disorder prediction 161 186 - -
Ssu7g1182 392 SMART hmgende2 25 96 IPR009071 -
Ssu7g1182 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 261 IPR013083 -
Ssu7g1182 392 SUPERFAMILY TRAF domain-like 209 381 - -
Ssu7g1182 392 CDD HMGB-UBF_HMG-box 28 76 - -
Ssu7g1182 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 124 391 - -
Ssu7g1182 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 6 97 - -
Ssu7g1182 392 Pfam HMG (high mobility group) box 27 87 IPR009071 -
Ssu7g1182 392 Pfam Seven in absentia protein family 203 332 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu7g1182 Sina 2.6e-15 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1182 - - gmx:100782920 528.48