Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1177 ATGGGTGATCCATATGGGTTGCCGGAGGATCTCCGGCGGCTCATATCAGCCAGAACCCACTTGAGCACTTCCAACACACACCTACTCGAGCCACTGTGTGTTCACCATGGTCTCAGTGCTGTTGCTGCGGCTACTCCACCCAACACCTATGACCCCAACATAGTTGGGGACGTTTTCTTCCCTCGTCCCTTCACTACTCACTTTGCTCATCATGAATATTCTTCCTCTAGTATAAACACTACTActactgctgctgctgctgctgctgctacTGCCTCGGATCATGCCACTGCTGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTTGGGTTTGATTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGATCAAGCAAACACTGCTCATGCCTCAACTTCAGACAAAACCCATCGTGCTGGTGGAAACACTGCTAGTATCCAACCACCAAGCTTCACAATTAACCAAGACCACAATGGCGATTCTAGTAATAACCCCAAGTGCTCAGAGAGCCTCAGTATCTCAAATTCATCTGAATTCGAGACATCCTCATCTGAAAACAACGATGAGGATCTTTCAGCCATTGCATTCATGATGAGGCAGTCAAGGGAGAAGCAGAAAGGGTTAGATCATAGGCAAAGTGATCATAGGAGGGTGAGAAAAAGCTGGAGAGCTAAAGTGGAGGAGATTGTGGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAGaatgttgaatgttgttgaacaAAGGGAGCAAGAGATGGCATCTAAggaggaagaaaggaagagGAAAGGGTCAATGTGGTTTGATCAACAGGTCCATGAACTGTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGACTTGAAGCATTGCCATCGGATGAAGCTATGGTTGAAGAACCACCAAATAAGAACAAGAGCCAGGGAAGTATTGATGCCAATGAATTTCCCTCTGAGGGTGTTGATCATGGAAGTAGTAGGTGGACAGAAATGGAGATTTCAAACTTGATACAGCTAAGGACTGGTTTTGATCAACGATTCAGAGAAAATGGGTGCTTGGAGAATGGGCTTTGGGATGAAATAGCAGCGAAATTGGCTTGTTTGGGGTTTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTCAGAAGGACAGTAGAGTGTGATGGTGCCAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGGTGATGATGATCTTTGA 1560 0.4353 MGDPYGLPEDLRRLISARTHLSTSNTHLLEPLCVHHGLSAVAAATPPNTYDPNIVGDVFFPRPFTTHFAHHEYSSSSINTTTTAAAAAAATASDHATAAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANTAHASTSDKTHRAGGNTASIQPPSFTINQDHNGDSSNNPKCSESLSISNSSEFETSSSENNDEDLSAIAFMMRQSREKQKGLDHRQSDHRRVRKSWRAKVEEIVDSHMRKIIETQDAWMERMLNVVEQREQEMASKEEERKRKGSMWFDQQVHELWAKEKAWVEARDAALIEVVRKHIGIGLEALPSDEAMVEEPPNKNKSQGSIDANEFPSEGVDHGSSRWTEMEISNLIQLRTGFDQRFRENGCLENGLWDEIAAKLACLGFDRSASECKQIWDEISISLRRTVECDGAKRRPWYLGLKLTGDDDL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1177 519 CDD GT1 118 184 - -
Ssu7g1177 519 ProSiteProfiles Myb-like domain profile. 118 177 IPR001005 -
Ssu7g1177 519 MobiDBLite consensus disorder prediction 402 429 - -
Ssu7g1177 519 MobiDBLite consensus disorder prediction 213 273 - -
Ssu7g1177 519 PANTHER - 28 504 - -
Ssu7g1177 519 CDD GT1 431 496 - -
Ssu7g1177 519 ProSiteProfiles Myb-like domain profile. 425 490 IPR001005 -
Ssu7g1177 519 Coils Coil 330 350 - -
Ssu7g1177 519 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 28 504 - -
Ssu7g1177 519 Gene3D - 433 495 - -
Ssu7g1177 519 Gene3D - 120 182 - -
Ssu7g1177 519 SMART sant 116 179 IPR001005 -
Ssu7g1177 519 SMART sant 429 492 IPR001005 -
Ssu7g1177 519 Pfam Myb/SANT-like DNA-binding domain 431 503 IPR044822 -
Ssu7g1177 519 Pfam Myb/SANT-like DNA-binding domain 118 205 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1177 Ssu-Chr7 26014721 26017308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1177 119 505 Trihelix Transcription Factor Family AT5G03680 43.735 1.87e-89 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g1177 Myb_DNA-bind_4 4.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1177 - - gmx:100787750 834.713