Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu7g1175 | ATGATTTCTTCTGGGATTAACTTGGTGATGACTGTGATTGGGTTTGCTGTGAGCACTATGTTCATTGTTTTCGTCTGCACCAGGCTCATCTGTGCTCGAATTCACCTGAATGCTTCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTTAGCATGATGGAGCAGGGTTACCATGGTCTTGAGCGCATAGTTGTAGCCAAATTTCCGACAAAGAAGTACAGTGACAAGTTTTTTGCTTCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGTGAAGATATGCTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATGTGACTTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCATTGCGCGAATTTCCCGAGAAAAAGCGGTTAATGCAACCCTTGTTCAGCTCCGCTTTGCAACCTCATTATGGCATAGAATCCTTTGACACTCATCATTATCACTGTATGATGGCTGATAATGGATTATCGTCAAGAACCCCTGACAATCACGGGTTGAATCCTATAGAAGAGAACCATTTTCCATCTGAGGGTGGTGGAGCAGTTGCTATGGACAATATCACTCGTTTAAGTGAGGGTGacttcattaaaaatgaagggAAGAAGCATGTAGAGAGCCCATCAAATTTCCAGATTTGA | 690 | 0.4246 | MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFPIVSRSNLSMMEQGYHGLERIVVAKFPTKKYSDKFFASAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPEKKRLMQPLFSSALQPHYGIESFDTHHYHCMMADNGLSSRTPDNHGLNPIEENHFPSEGGGAVAMDNITRLSEGDFIKNEGKKHVESPSNFQI | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu7g1175 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 134 | IPR013083 | - | |
| Ssu7g1175 | 229 | CDD | RING-H2_PA-TM-RING | 86 | 129 | - | - | |
| Ssu7g1175 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Ssu7g1175 | 229 | SUPERFAMILY | RING/U-box | 71 | 135 | - | - | |
| Ssu7g1175 | 229 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Ssu7g1175 | 229 | SMART | ring_2 | 87 | 128 | IPR001841 | - | |
| Ssu7g1175 | 229 | PANTHER | OS11G0150450 PROTEIN | 1 | 226 | - | - | |
| Ssu7g1175 | 229 | PANTHER | OS11G0150450 PROTEIN | 1 | 226 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu7g1175 | Ssu-Chr7 | 25956149 | 25958291 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu7g1175 | 45 | 136 | C3H Transcription Factor Family | AT4G10150 | 42.391 | 4.03e-20 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu7g1175 | - | - | gmx:100794979 | 445.662 |