Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1165 ATGTCTCAGACTGTTGTCCTCAAAGTTGGTATGTCATGTGAAGGTTGTGTTGGAGCAGTAAAGAGAGTTCTAGGAAAATTGGATGGTGTGGAATCATATGACATTGATTTGAAGGAACAGAAGGTGGTAGTGAAGGGAAATGTCCAGCCAGACACAGTTCTGCAGACCGTTTCCAAAACTGGGAAGAAGACTACCTTCTGGGAAGGTGAAGCAGCATCCGAAACTAGCACAGTAACTGTTGCCTAA 246 0.4431 MSQTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGKKTTFWEGEAASETSTVTVA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1165 81 Pfam Heavy-metal-associated domain 7 63 IPR006121 GO:0046872
Ssu7g1165 81 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 77 IPR045181 GO:0046872
Ssu7g1165 81 SUPERFAMILY HMA, heavy metal-associated domain 1 68 IPR036163 GO:0046872
Ssu7g1165 81 ProSiteProfiles Heavy-metal-associated domain profile. 3 66 IPR006121 GO:0046872
Ssu7g1165 81 PANTHER COPPER TRANSPORT PROTEIN CCH 1 77 - -
Ssu7g1165 81 CDD HMA 10 65 IPR006121 GO:0046872
Ssu7g1165 81 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1165 Ssu-Chr7 25784003 25787847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1165 1 78 Primary Pumps ATPases AT1G63440 25.926 8.62e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1165 K07213 - gmx:100799342 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1165 7 25784003 25787847 Ssu7g1165 7 25784003 25787847 ECH