Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1162 ATGGATTGTGATTGTTACACAAACATGGAACTTCTCTCTGCGTCTGTCACACTAAGTAAATGTCAAACATTTTCCTTTCCGAAACCAAAGACAACCCAAATTCATGAACTTCCAATAAACATAAGATTACCCAACAAAAGAAACCATTCCAATCTTTattcttctttatctttctcatgTAATTGGTCCATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATGCTTCCACCACACAGAACCGCCACTGGATGGTGCTCATGGACACGCCTCCTCATGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAGCACTCTTCAGACACTTCTTGGAAGTGAGAAAGATGCTCAGATGTGTATATATGATACTTCATGGGACACCCACTTCGGTTTCTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTTGCCAGTTTGCCTGGGGTCTTGTTGGTTAGGCCTGACCCAGATTTCAACTCTTTGCAAAAGGACTATAGTTTATCAAGTGACCAGGCAGGTTCCCTGTCAGGATTACAAACTAGGACCAATATGTTGTTTCCTGCCGGAAATTCAAAGCACTGGCTTGTTAGAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTTGattattatgctcaaattttGACCAAGCTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGaaaacaaattttggtttttgctGTGAACTTGATGAGGATTGTGCACAAGAGCTAGCTGGTGTGCCAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTTCGAAAATAAGGATTATGGAGGTAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCCGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGCACAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATggacaaaatttcaaaaaggtCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTAGCCAAGCCTAACCCACCAAGATACAACAGGAATCATGCCAGATCATCAAGTTGA 1203 0.394 MDCDCYTNMELLSASVTLSKCQTFSFPKPKTTQIHELPINIRLPNKRNHSNLYSSLSFSCNWSITRVAATTYPSFNASTTQNRHWMVLMDTPPHGVNSKPQVIDYYVSTLQTLLGSEKDAQMCIYDTSWDTHFGFCCDIDEEISSQLASLPGVLLVRPDPDFNSLQKDYSLSSDQAGSLSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKLMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNNFEFENKDYGGSNLENSWNVSNSSEASPEAPLKTKKLFVTGLSFYTSEKTLRTAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNHARSSS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1162 400 SMART rrm1_1 309 382 IPR000504 GO:0003723
Ssu7g1162 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 189 277 IPR037045 -
Ssu7g1162 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 68 163 IPR037045 -
Ssu7g1162 400 Gene3D - 279 400 IPR012677 -
Ssu7g1162 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Ssu7g1162 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Ssu7g1162 400 SUPERFAMILY RNA-binding domain, RBD 295 396 IPR035979 GO:0003676
Ssu7g1162 400 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 59 398 IPR039206 GO:0016554
Ssu7g1162 400 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 59 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1162 Ssu-Chr7 25722818 25725448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1162 300 393 C2H2 Transcription Factor Family AT2G19380 34.043 6.28e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1162 - - gmx:100791652 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1162 7 25722818 25725448 Ssu7g1162 7 25722818 25725448 ECH