Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1157 ATGTATTTCACTGACAAAATGCAGCGCCTGAAGATGGGGTTCTCTGACTACATCCAAGCATTGGAAGAGGAACGCCGTAAGATTCAGGTGTTCTCCAAAGAGCTTCCTCTTTCATTAGAACTGGTCACACAAGccaTTGAAGCTTGCAAACAGCAATTGTCTGGCACCACGAGTGAGTATAATTTGAACAGCCAATCGGAGTGTTCGGAGCAGACAACATCAACTGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAGGATGATGAAGATGACGAGCAACATTCTCATAAGCAAAGGGTTTCAAAGGAGAATAGGAACTGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGTGACTAGGAAAGTGCCTGGGATGGAGTTGAAGAGAAGTGGAAGTGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGCTGGCAAGACAAGTGAATCATTGAGTAAAGCACCCTCTTCGGTGGCGACCGGCATGAATGCTGAAAGCAGTAAAAGAGAGGAGAAGGAGGGACAGAGAAAGCAGCGCAGGTGCTGGTCACAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCGGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGGGACCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCTATGATTCACAACAGTTCCAATCCACAAACAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTTCAATCACCAGAATATGCAGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTGCAGCACCTGCTGGAATTTATGCACCAGTGGCCACACATCCTCCAACTGTTTCTCACCCACCAGCTGATTCAATTAAGAAGCCACAGTTTAAGAGAGTGGAGCTGTTTGAGCATTCAAATTCCCAAGAAAGGACTAATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACCTCATCCTCCTCCACACATACCTCTACTTCCCCTGGCTATTGA 1137 0.4626 MYFTDKMQRLKMGFSDYIQALEEERRKIQVFSKELPLSLELVTQAIEACKQQLSGTTSEYNLNSQSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEDDEDDEQHSHKQRVSKENRNCDKRKSDWLRSVQLWNPDPPAEEDVTRKVPGMELKRSGSGGGAFQPFHKEERAGKTSESLSKAPSSVATGMNAESSKREEKEGQRKQRRCWSQDLHKRFLHALRQLGGADSATPKQIRDLMNVDGLTNDEVKSHLQKYRLHTRRPSPMIHNSSNPQTAPFVLVGNIFVQSPEYAAVATSTASREVTTVAAPAGIYAPVATHPPTVSHPPADSIKKPQFKRVELFEHSNSQERTNHSEGAVHSNSPTSSSSTHTSTSPGY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1157 378 MobiDBLite consensus disorder prediction 342 378 - -
Ssu7g1157 378 MobiDBLite consensus disorder prediction 90 208 - -
Ssu7g1157 378 MobiDBLite consensus disorder prediction 103 128 - -
Ssu7g1157 378 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Ssu7g1157 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 376 IPR044787 GO:0003700|GO:0006355
Ssu7g1157 378 MobiDBLite consensus disorder prediction 177 192 - -
Ssu7g1157 378 MobiDBLite consensus disorder prediction 193 208 - -
Ssu7g1157 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Ssu7g1157 378 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 376 - -
Ssu7g1157 378 Gene3D - 204 262 - -
Ssu7g1157 378 MobiDBLite consensus disorder prediction 352 378 - -
Ssu7g1157 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Ssu7g1157 378 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1157 Ssu-Chr7 25635690 25637493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1157 1 319 G2-like Transcription Factor Family AT1G68670 46.439 3.15e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu7g1157 Myb_DNA-binding 8.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1157 - - gmx:100796683 602.438