Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1156 ATGCAAAAAACTTACTCTTTCTCCTGCATATCTTCTTGTGGCAGTGATAGTGCCTGCTTAGAAGCTGATGAGGTTGATAACGAAGAGTCCATTTCCCTCTCCCTTGGCCCTCCTAGCCAGCTCAAATCCAAAGTCTCTAACCCAAAACACTCTTCCACTATGCGTGATCACCAGCAAAAGCCTAGCTCTGATGACCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGCCACCAAACCTTCTTCCACTCCAATTCACGGTCAATATTGGATCCCCACTCCTCAACAAATCCTTATTGGACCCACCCAGTTTTCTTGCACAGTCTGTAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGAGCGGAGTCATTGAGAGGGTCAAAGGCAAGTTCTTCGATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTtgcaaaaataacataaactatCCTAGGGCAAGGCCCCTGAAGGATTTCAGGACCCTCCAGACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTCATAAGCCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGCGGGAAGCTTTGGTTCTGCGTCTGTGGTTCTGATTTCAAGCACAAAAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCACACACCTTGAGTGAAGAAAAAGGTAATGAACGTTACGTGcgagaagaaaaaggaggagGTGGAGATGATGATAGTGAAGTGATTGTTACTTTCATATAA 837 0.4564 MQKTYSFSCISSCGSDSACLEADEVDNEESISLSLGPPSQLKSKVSNPKHSSTMRDHQQKPSSDDLSGVTVALHIGLPTTATKPSSTPIHGQYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGSKASSSMLRLPCYCCEEGCKNNINYPRARPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHTLSEEKGNERYVREEKGGGGDDDSEVIVTFI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1156 278 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Ssu7g1156 278 Gene3D Classic Zinc Finger 107 130 - -
Ssu7g1156 278 MobiDBLite consensus disorder prediction 32 48 - -
Ssu7g1156 278 PANTHER ZINC FINGER PROTEIN WIP2 1 270 IPR043584 GO:0003700|GO:0010468
Ssu7g1156 278 SMART c2h2final6 193 213 IPR013087 -
Ssu7g1156 278 SMART c2h2final6 156 188 IPR013087 -
Ssu7g1156 278 SMART c2h2final6 108 130 IPR013087 -
Ssu7g1156 278 PANTHER ZINC FINGER PROTEIN WIP6 1 270 - -
Ssu7g1156 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Ssu7g1156 278 SUPERFAMILY beta-beta-alpha zinc fingers 84 129 IPR036236 -
Ssu7g1156 278 MobiDBLite consensus disorder prediction 29 66 - -
Ssu7g1156 278 Gene3D Classic Zinc Finger 131 217 - -
Ssu7g1156 278 SUPERFAMILY beta-beta-alpha zinc fingers 178 213 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1156 Ssu-Chr7 25593395 25594940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1156 27 252 C2H2 Transcription Factor Family AT1G13290 69.362 3.62e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1156 None None None