Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu7g1156 | ATGCAAAAAACTTACTCTTTCTCCTGCATATCTTCTTGTGGCAGTGATAGTGCCTGCTTAGAAGCTGATGAGGTTGATAACGAAGAGTCCATTTCCCTCTCCCTTGGCCCTCCTAGCCAGCTCAAATCCAAAGTCTCTAACCCAAAACACTCTTCCACTATGCGTGATCACCAGCAAAAGCCTAGCTCTGATGACCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGCCACCAAACCTTCTTCCACTCCAATTCACGGTCAATATTGGATCCCCACTCCTCAACAAATCCTTATTGGACCCACCCAGTTTTCTTGCACAGTCTGTAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGAGCGGAGTCATTGAGAGGGTCAAAGGCAAGTTCTTCGATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTtgcaaaaataacataaactatCCTAGGGCAAGGCCCCTGAAGGATTTCAGGACCCTCCAGACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTCATAAGCCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGCGGGAAGCTTTGGTTCTGCGTCTGTGGTTCTGATTTCAAGCACAAAAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCACACACCTTGAGTGAAGAAAAAGGTAATGAACGTTACGTGcgagaagaaaaaggaggagGTGGAGATGATGATAGTGAAGTGATTGTTACTTTCATATAA | 837 | 0.4564 | MQKTYSFSCISSCGSDSACLEADEVDNEESISLSLGPPSQLKSKVSNPKHSSTMRDHQQKPSSDDLSGVTVALHIGLPTTATKPSSTPIHGQYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGSKASSSMLRLPCYCCEEGCKNNINYPRARPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHTLSEEKGNERYVREEKGGGGDDDSEVIVTFI | 278 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu7g1156 | 278 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 110 | 130 | IPR013087 | - | |
Ssu7g1156 | 278 | Gene3D | Classic Zinc Finger | 107 | 130 | - | - | |
Ssu7g1156 | 278 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Ssu7g1156 | 278 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 270 | IPR043584 | GO:0003700|GO:0010468 | |
Ssu7g1156 | 278 | SMART | c2h2final6 | 193 | 213 | IPR013087 | - | |
Ssu7g1156 | 278 | SMART | c2h2final6 | 156 | 188 | IPR013087 | - | |
Ssu7g1156 | 278 | SMART | c2h2final6 | 108 | 130 | IPR013087 | - | |
Ssu7g1156 | 278 | PANTHER | ZINC FINGER PROTEIN WIP6 | 1 | 270 | - | - | |
Ssu7g1156 | 278 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 108 | 135 | IPR013087 | - | |
Ssu7g1156 | 278 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 129 | IPR036236 | - | |
Ssu7g1156 | 278 | MobiDBLite | consensus disorder prediction | 29 | 66 | - | - | |
Ssu7g1156 | 278 | Gene3D | Classic Zinc Finger | 131 | 217 | - | - | |
Ssu7g1156 | 278 | SUPERFAMILY | beta-beta-alpha zinc fingers | 178 | 213 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu7g1156 | Ssu-Chr7 | 25593395 | 25594940 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu7g1156 | 27 | 252 | C2H2 Transcription Factor Family | AT1G13290 | 69.362 | 3.62e-118 | 339 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu7g1156 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu7g1156 | - | - | gmx:100784037 | 513.072 |