Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1155 ATGCCCTACCTAAAATACTGTTTGTGCTCTCTATTCTATGCTTTGCCTCCTCCGCTCTCTAGCTCTTTGCTGGTGCTCTTGTCTCCTCCATTTCCAAACATGCCAAAATACACACATCATTGTCATCCTTATAGTTTCCTTCATTCCACTGATAGTGCCTGCTTAGAAGCTGATGAGGTTGATAACGAAGAGTCCATTTCCCTCTCCCTTGGCCCTCCTAGCCAGCTCAAATCCAAAGTCTCTAACCCAAAACACTCTTCCACTATGCGTGATCACCAGCAAAAGCCTAGCTCTGATGACCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGCCACCAAACCTTCTTCCACTCCAATTCACGGTCAATATTGGATCCCCACTCCTCAACAAATCCTTATTGGACCCACCCAGTTTTCTTGCACAGTCTGTAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGAAGTATAGGAAAGGAGCGGAGTCATTGAGAGGGTCAAAGGCAAGTTCTTCGATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTtgcaaaaataacataaactatCCTAGGGCAAGGCCCCTGAAGGATTTCAGGACCCTCCAGACACACTACAAGAGGAAGCATGGAGGGAAGCCATTCGAGTGCAGGAAGTGTCATAAGCCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCGTCTGTGGTTCTGATTTCAAGCACAAAAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCACACACCTTGAGTGAAGAAAAAGGTAATGAAGGTTACGTGcgagaagaaaaaggaggagGTGGAGATGATGATAGTGAAGTGGTTGTTGTTACTTTCATATAA 945 0.4529 MPYLKYCLCSLFYALPPPLSSSLLVLLSPPFPNMPKYTHHCHPYSFLHSTDSACLEADEVDNEESISLSLGPPSQLKSKVSNPKHSSTMRDHQQKPSSDDLSGVTVALHIGLPTTATKPSSTPIHGQYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSKYRKGAESLRGSKASSSMLRLPCYCCEEGCKNNINYPRARPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHTLSEEKGNEGYVREEKGGGGDDDSEVVVVTFI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1155 314 MobiDBLite consensus disorder prediction 284 304 - -
Ssu7g1155 314 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Ssu7g1155 314 SMART c2h2final6 191 223 IPR013087 -
Ssu7g1155 314 SMART c2h2final6 143 165 IPR013087 -
Ssu7g1155 314 SMART c2h2final6 228 248 IPR013087 -
Ssu7g1155 314 SUPERFAMILY beta-beta-alpha zinc fingers 119 164 IPR036236 -
Ssu7g1155 314 PANTHER ZINC FINGER PROTEIN WIP6 49 305 - -
Ssu7g1155 314 MobiDBLite consensus disorder prediction 67 83 - -
Ssu7g1155 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Ssu7g1155 314 MobiDBLite consensus disorder prediction 279 305 - -
Ssu7g1155 314 MobiDBLite consensus disorder prediction 65 100 - -
Ssu7g1155 314 Gene3D Classic Zinc Finger 142 164 - -
Ssu7g1155 314 Gene3D Classic Zinc Finger 165 252 - -
Ssu7g1155 314 PANTHER ZINC FINGER PROTEIN WIP2 49 305 IPR043584 GO:0003700|GO:0010468
Ssu7g1155 314 SUPERFAMILY beta-beta-alpha zinc fingers 212 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1155 Ssu-Chr7 25555994 25558433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1155 62 287 C2H2 Transcription Factor Family AT1G13290 68.936 2.47e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1155 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1155 - - gmx:100784037 490.73