Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1154 ATGAACTTCACTAAATCAAGGTCCACCCCCCTCGTGAACCCCATCAAGTTGTTACAAACAAAAAATGGACGGAGGCGGTTCCACAGACGAAGCCACCACAACCAGCGACTCACTTTCCGTTCCGGCCAATCTATCTCCGCCGCCGACGGCGCGCTCAGCCGCGTCGGCAGCGCCGTCGTCGACTCCGACGGATGCGTCGGCTCCGGCGAAGCCGAATCCCGGAAACTCCCGTCGTCGAAATACAAAGGAGTGGTGCCGCAACCGAACGGTCGCTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAAGCCGCCAGGGCCTACGACATCGCCGCGCAGAGGTTCCGCGGCCGCGACGCCGTCACGAACTTCAAGCCTCTCGCCGGCGCCGGCGACGACGCCGAGTCCGAGTTCCTCAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCGCTCGCGGCGGGAGGCGCCGCCGCGACGGCGAGACAAACGCGTCCGCGTCGGGCGGCGGCGCGTGCGACTCGAAGGCGCGTGAGCAGTTGTTCGAGAAAACGGTTACGCCGAGCGACGTCGGGAAGCTGAATCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGGGCGGCGCCGGCGACGGAACCTCGCCGTGCGCGGCGCCGGCGAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAGAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTTCTCACCAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAATCTGAGGGCCGGTGATGCGGTTCGGTTTTTCAAGTCGACCGGACCGGACCGGCAGCTGTATATAGACTGCAAGGCGAGGAATAGTGGCGGTTTTGGTGAGGTTGATAATAGTACTAATGCTGGTGGTTTGTTCATTCCGGTCGGACCGGTCGTTGAGCCGGTTCAGATGATTCGGCTTTTTGGGGTCAACCTTTTGAAACTGCCCGGTTCGGATGGTGTCGGGGTTGGCTGTGACGGGAAGCGGAAAGAGATGGAACTGTTTGCATTAGAATGTAGCAAGAAGCTGAAAGTAATTGGAGCTTTGTAA 1170 0.5991 MNFTKSRSTPLVNPIKLLQTKNGRRRFHRRSHHNQRLTFRSGQSISAADGALSRVGSAVVDSDGCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSARGGRRRRDGETNASASGGGACDSKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGAGDGTSPCAAPAKGVLLNFEDVGGRVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFKSTGPDRQLYIDCKARNSGGFGEVDNSTNAGGLFIPVGPVVEPVQMIRLFGVNLLKLPGSDGVGVGCDGKRKEMELFALECSKKLKVIGAL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1154 389 MobiDBLite consensus disorder prediction 168 196 - -
Ssu7g1154 389 SMART B3_2 204 314 IPR003340 GO:0003677
Ssu7g1154 389 Pfam AP2 domain 79 127 IPR001471 GO:0003700|GO:0006355
Ssu7g1154 389 Pfam B3 DNA binding domain 204 298 IPR003340 GO:0003677
Ssu7g1154 389 SUPERFAMILY DNA-binding domain 79 135 IPR016177 GO:0003677
Ssu7g1154 389 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Ssu7g1154 389 Gene3D - 193 320 IPR015300 -
Ssu7g1154 389 MobiDBLite consensus disorder prediction 168 185 - -
Ssu7g1154 389 CDD AP2 79 134 IPR001471 GO:0003700|GO:0006355
Ssu7g1154 389 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Ssu7g1154 389 SUPERFAMILY DNA-binding pseudobarrel domain 202 310 IPR015300 -
Ssu7g1154 389 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Ssu7g1154 389 CDD B3_DNA 203 309 IPR003340 GO:0003677
Ssu7g1154 389 ProSiteProfiles B3 DNA-binding domain profile. 204 315 IPR003340 GO:0003677
Ssu7g1154 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 42 389 IPR044800 GO:0003700
Ssu7g1154 389 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 42 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1154 Ssu-Chr7 25512144 25515196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1154 57 389 B3 DNA Binding Superfamily AT1G25560 61.877 6.05e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Ssu7g1154 B3 6.3e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1154 K09287 - gmx:100789009 558.91