Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1148 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCCTCTGGAGCATGTGGAAAAGTTATATGGAATAGCAATCCTAGTAGAACTTGCCCAAATTGTCAACATGTTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGCGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATTCAAAACCTCACCCTTTCATTGAAGAATTTATTACTACTCTTGAAGGGGATGACGGGATTTGTTATACTCATCCTCAACATTTACCAGatGTCAAGGAAGATGGAAGTGCTTCTCACTTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATTTGTGATCGGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGGTTCAAAAAGGCTGTAAAAAGATTATGGTCCTGTATATAAGCCTAGTGAGAGGAGGAAAATCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAgaggatgaaaaggatggagagTATGTTATCTCCAAGGTGTTTTACCAGCAGCTGCAAGTCAAATTTGGTGAAAAAGATGACCAGGATATTCCTGAAATCACTGAAGCAACTATATTGAAAGTGGATCCTGTCACTCCCAAATCTGTGACTCCCGAACCTCCTCGTATTGAAAAGAATTCTTCAAATCTGGACCTAGGACAAGAATCACATCACATTCCTCAGCATCCTCAGATGGATTGTGTAGATGACCTTCAGGTTGATTGTGAAGATCTTGCAAAAGATGATCTATCAATAGTAGAAACTCAAAATAATCAAGGGATAGATAATATAGAAAACAATGCTGAGGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGAGTTCACAACAACTTGTCGAATCATTGTTCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGGGAAAATGAACACAAGAAACGACCCAGTCTTTCTGTCTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATATCGAAGAGTGCCAAAATCTTGTCCTTGACACTGCAAATGTAGAGCCTGAGACACCGCCTTCAGAATTTCGACTAAGTCAGCTGGATTTCGGTTCACAGGATAGCATTATTTCCTGGTGTGTCAGCAAAGCAATCGACTAA 1269 0.3995 MAGPSWLVDKSRIATKIKSASGACGKVIWNSNPSRTCPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIEEFITTLEGDDGICYTHPQHLPDVKEDGSASHFFHRAIKAYNTGSRKRRKICDRDFGDVRWHKTGRTKPVILNGVQKGCKKIMVLYISLVRGGKSEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQLQVKFGEKDDQDIPEITEATILKVDPVTPKSVTPEPPRIEKNSSNLDLGQESHHIPQHPQMDCVDDLQVDCEDLAKDDLSIVETQNNQGIDNIENNAEEDSKWWDSESQNLLSSQQLVESLFLCDDLLQSQSPNRDGENEHKKRPSLSVYAHLGPEHLKKDIEECQNLVLDTANVEPETPPSEFRLSQLDFGSQDSIISWCVSKAID 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1148 422 Gene3D NAC domain 65 218 IPR036093 GO:0003677|GO:0006355
Ssu7g1148 422 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Ssu7g1148 422 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Ssu7g1148 422 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Ssu7g1148 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 416 IPR044799 GO:0003700
Ssu7g1148 422 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1148 Ssu-Chr7 25408830 25414300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1148 28 214 NAC Transcription Factor Family AT1G28470 56.995 2.22e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g1148 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1148 - - gmx:100787702 789.645