Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1145 ATGATACAGGAAGATCAAGGGCAGTGTTCCTCTCAAGCGATCAACAACTACCATCAAGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGAGGATTGAACATGTACCCTGGTGAAGTTTCTCCAATCTTGCATCAACCATGGTCTATGCCTCATCATCACCCCTTCAACCCGGTGAGAGAGCACGACCCTTTTCTCGTCCCTCCCCAACCTTCACCCTATGCAAGTTTGTTCAACAGAAGGGGTCCTTCTCTTCAGTTTGCGTATGATGGTTCATCTTCTGACCATCTTAGGATCATATCTGATACCCTTGGACCGGTGGTTCAACCCGGTTCGGCACCCTTTGGCCTCCAAACCGAGCTCGCCAAGATGACTGCCCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGCGAATCAATAACCATCTTGCCAAGCTGCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCACTGATAGCAGAATCTAGTCCAGTTCCTACGGAGGCTGATGAGTTGACAGTAGTGGACGAAGCTGATGAAGATGGCAACTCTGTGATCAAAGCCTCGCTGTGCTGTGAAGATAGGTCAGATCTGTTCCCTGAACTCATCAAGACATTGAAAGCGTTGAGGCTAAGAACCCTTAAAGCTGAGATCACGACGCTTGGTGGGCGCGTCAAGAACGTGTTGTTCGTCACCGGAGAAGAAGCAGATTCAAGCAGTGGCAGCGAAGAGCATGGCCACCAACAGCAGAACTGCATCAGCTCAATACAAGAAGCGCTTAAGGCAGTGATGGAGAAGAGCGTGGGGGATGAATCTGCTTCTGCAAATATTAAGAGACAAAGGACCAACATAATATCAATGTCCTAG 999 0.4855 MIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQNNDIFGGGGLNMYPGEVSPILHQPWSMPHHHPFNPVREHDPFLVPPQPSPYASLFNRRGPSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFVTGEEADSSSGSEEHGHQQQNCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1145 332 PANTHER TRANSCRIPTION FACTOR BHLH30 64 330 - -
Ssu7g1145 332 Pfam Helix-loop-helix DNA-binding domain 150 196 IPR011598 GO:0046983
Ssu7g1145 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Ssu7g1145 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 203 IPR036638 GO:0046983
Ssu7g1145 332 CDD bHLH_AtAIG1_like 142 218 - -
Ssu7g1145 332 Gene3D - 142 203 IPR036638 GO:0046983
Ssu7g1145 332 CDD ACT_UUR-ACR-like 233 304 - -
Ssu7g1145 332 SMART finulus 153 202 IPR011598 GO:0046983
Ssu7g1145 332 PANTHER TRANSCRIPTION FACTOR BHLH30 64 330 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1145 Ssu-Chr7 25339375 25341427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1145 10 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.803 3.47e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g1145 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1145 - - pvu:PHAVU_007G101900g 580.867