Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1137 ATGATGCCCCCTGAGCAAGAAACCACTATTGCACCAAATATTCCACCCATCACAACCCGACCAGAAAACAGCTCGGTCCACCACGAACCAGAGGGTTCAACcaataacaaaatcaaaccaAGTTTGGATGATAATGGCATTCCAGCGCAGCATCAGACTCAGCCCACAACACCACCACCAGCAAGATTTTCCGTTCTTCACCAATCCTTGCGTCCCATTACCCTCAAATTTGAAGACGTATCTTACACAATAACCTTCGAAAACCAAGAGAAGGGTTGTGTCTTACGTAAAGAGTCAAAGCTAAGAAGGAAGGTGCTGACCGGCGTAACCGGAGTGGCGAAGCCCGGCGAGTTGACGGCAATGCTGGGTCCCTCCGGGAGCGGCAAGACGACCCTGCTCACCGCCCTGGCGGGGAGGCTGGCCGGAAAAGTGTCCGGCACCATAACCTACAACGGCCACAGCGACCCTGCCTTCGCGAAACGGAAGATCGGGTTCGTGCCACAGGACGACGTTCTCTACCCTCACCTCACGGTGTTGGAGACCCTCACCTACGCGGCTTTGTTGAGGCTACCGAAGAGTTTGAgcagagaagagagaaaggagcACGCGGAGATGGTGATCGCGGAGCTCGGGCTGACGCGGTGTCGTAACAGCCCCGTCGGAGGGTGCATGGCTCTGTTCCGAGGGATTTCGGGCGGGGAACGGAAACGGGTCAGTATTGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTCGTCGATGAGCCCACTTCGGGTTTGGACTCCACCACGGCCCAACTTATTGTGTCGGTGCTCCGCGGGCTAGCCCGCGCCGGTCGGACCGTCGTCACCACCATCCACCAGCCTTCCAGCCGGTTGTATAGGATGTTTGATAAGGTGGTCGTCTTGTCGGACGGGTACCCGATTTATAGCGGGCATGCGGGTCGGGTCATGGACTATCTCGGATCCGTTGGATACGTCCCAGCTTTCAACTTCATGAACCCCGCGGATTTTCTACTTGACCTTGCTAACGGCATAGTTGCTGATGTAAAACATGATGATCAGATAGACCACCCTGAGGATCAAGCTTCAGTCAAACAGTCCCTAATTTCGTCCTTTAAGAAGAACTTGTATCCTGCTCTTAAAGCAGAAATTCAGCAAAATAACAGTGACCCGCTGGCTTTTACATCAGGAACACCTAGACGCTCTGATAACCAATGGACTACTAGCTGGTGGGAGCAATTCAAGGTGCTTCTTAAGAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTATCCATTCTCTCAGGACTTCTGTGGTGGCACTCTGATCCTGCACATGTACAAGATCAGGTAGGactgcttttcttcttctccatcTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCCTTTCCTCTGGAGAGGCCAATGTTGATAAAAGAAAGATCATCAGGGATGTACCAACTCTCCTCATACTATGTTGCCAGAATGGTGGGGGACTTACCAATGGAGCTAGTGCTTCCTACTATCTTTGTAACTATCTCCTACTGGATGGGTGGTCTCAAGCCTTCGTTGGTTACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTCCTGGTCTCTCAAGGCATAGGCCTAGCGCTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTAGCTTCAGTGGCCATGCTGGTGTTTCTCTTGGCTGGTGGTTACTACATTCAGCAAATGCCTGCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCACTACTGCTATAAGCTACTAGTAGGAGTCCAGTATTCAGTAAATGAAGTATACGAGTGTGGACCAGGGTTGCATTGTAGGATAAGAGATTTTTCTGCCATAAAGTGTCTAGGGcttgatgataataatatgtgGGGAGATGTGGCTGCATTGACTGTAATGTTGATTGGATACAGAGTTGTGGCATATCTAGCTTTGAGGATGGGGCAGCCTCGCTGA 2040 0.4873 MMPPEQETTIAPNIPPITTRPENSSVHHEPEGSTNNKIKPSLDDNGIPAQHQTQPTTPPPARFSVLHQSLRPITLKFEDVSYTITFENQEKGCVLRKESKLRRKVLTGVTGVAKPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHSDPAFAKRKIGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREERKEHAEMVIAELGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGHAGRVMDYLGSVGYVPAFNFMNPADFLLDLANGIVADVKHDDQIDHPEDQASVKQSLISSFKKNLYPALKAEIQQNNSDPLAFTSGTPRRSDNQWTTSWWEQFKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPAHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVAMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGPGLHCRIRDFSAIKCLGLDDNNMWGDVAALTVMLIGYRVVAYLALRMGQPR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1137 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 323 IPR027417 -
Ssu7g1137 679 MobiDBLite consensus disorder prediction 1 62 - -
Ssu7g1137 679 CDD ABCG_EPDR 72 312 - -
Ssu7g1137 679 SMART AAA_5 115 308 IPR003593 -
Ssu7g1137 679 Pfam ABC transporter 109 258 IPR003439 GO:0005524
Ssu7g1137 679 Pfam ABC-2 type transporter 287 350 IPR043926 GO:0140359
Ssu7g1137 679 Gene3D - 83 324 IPR027417 -
Ssu7g1137 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 330 IPR003439 GO:0005524
Ssu7g1137 679 ProSitePatterns ABC transporters family signature. 230 244 IPR017871 GO:0005524
Ssu7g1137 679 MobiDBLite consensus disorder prediction 11 62 - -
Ssu7g1137 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 676 - -
Ssu7g1137 679 Pfam ABC-2 type transporter 413 619 IPR013525 GO:0016020|GO:0140359
Ssu7g1137 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 45 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1137 Ssu-Chr7 25150119 25155191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1137 104 306 Calmodulin-binding Proteins AT2G36910 30.189 1.59e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1137 K05681 - gmx:100792991 1221.84