Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1130 ATGACTGAAGAAAGTGCTGGGAACACAGTTGCAACCTCTATTACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTCTTTCTTCCTGGAACGATACTAATAACACATGGATTAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAAGCCTCACTGTTGAGTCCACTCGCAGACTCGTTGAGCCACCTGTTCCTTCCTCCAACGAGTTGATGGGAGAACATGCTTCAGATAATCAACTTTGGAGTCATGTTCTATCAGGTGTTGGATCAAATGGCGAGTTGCACAACAGCCAAGAAATTGGAGAGAACCTTCTGGATGCACTGTCATCCAAAAGCATGACAAGTACTATGTTTCAACCAGTCTGTGACTACTTGAAGAAACTTGATACCAGTTGGGAATATAGTGGTTCAACTTCATTAAATAGCTTTGAGAAGCACTTAAATGGGTTTAGTGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAATCTTGTTAGCACATGGTCTATAGCTCCACCAGACCCAGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACATGTCCTTGAATTCTTCCATGGAACACTTTCCACAATCTGATCACTTCAAGCAACCTTTTGTAGACTCCACATCATGCTCTCTTGGAGGAGCAAATAGAAATTCTGGAGTGCTCCCCTGCTATGATCATGACATGAAGGTCAAGCAAGAGTATCATGCAAGTGAAGTGCCAGGAGCTGTATTTGGAAAGTCATTAAATGTAAATGGATATCTAAATGGATTTAATAATAACCTTTCAGTGGGAGATAGTTGCAAACTCTACCATGGGCTGCCCAATACTTCTTCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGACTGGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGTACGAAGCACCCGAACTTAACTGAACCAAAGAAGCAGGGTCTTCAGACACCATCACAGATAAGAACCAATATTAATGGGAGAGGGGAGGGGACAACACGTgaagtaaagaagaaaagatCTGAAGAATCTTCAGATGCAATGCTGAAAAAGCCTAAGCAAGATACATCAACTGCTTCCTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATAACAGCCCTCCAGCAAATTGTGTCTCCATTTGGAAAGACGGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGGCTAATTCTCACAAGGATCCGTGGGGAAGCTTGGATAGGAAAGATAAGGAGGACACAAAGCTAGACCTTCGGAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTGGTTTACAGAGAGAGCAGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1518 0.4196 MTEESAGNTVATSITPLNWWYLQANSLSSWNDTNNTWINQPNPNSSSSCEEDISVSTSFTNASNHSSLTVESTRRLVEPPVPSSNELMGEHASDNQLWSHVLSGVGSNGELHNSQEIGENLLDALSSKSMTSTMFQPVCDYLKKLDTSWEYSGSTSLNSFEKHLNGFSEAMIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNMSLNSSMEHFPQSDHFKQPFVDSTSCSLGGANRNSGVLPCYDHDMKVKQEYHASEVPGAVFGKSLNVNGYLNGFNNNLSVGDSCKLYHGLPNTSSCTRNFSDVISFNSRLGRPVIGIHAQKPSTKHPNLTEPKKQGLQTPSQIRTNINGRGEGTTREVKKKRSEESSDAMLKKPKQDTSTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANSHKDPWGSLDRKDKEDTKLDLRSRGLCLVPTSCTPLVYRESSGPDYWTPAYRGCLYR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1130 505 MobiDBLite consensus disorder prediction 325 395 - -
Ssu7g1130 505 MobiDBLite consensus disorder prediction 360 379 - -
Ssu7g1130 505 MobiDBLite consensus disorder prediction 330 359 - -
Ssu7g1130 505 CDD bHLH_AtbHLH_like 399 441 IPR045239 -
Ssu7g1130 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Ssu7g1130 505 PANTHER TRANSCRIPTION FACTOR BHLH111 31 491 - -
Ssu7g1130 505 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 491 - -
Ssu7g1130 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 449 IPR036638 GO:0046983
Ssu7g1130 505 Gene3D - 396 452 IPR036638 GO:0046983
Ssu7g1130 505 MobiDBLite consensus disorder prediction 380 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1130 Ssu-Chr7 25061042 25064106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1130 42 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.954 9.99e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1130 - - aprc:113873522 921.768