Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1129 ATGGGTAGAAAGGGAAGTTGTGAGAATCCAGACGTTGTGAACAGAGGCACCTGGTCTGCTGAGGAAGACAAAATCCTTATGAACTATGTTCAAGTCCATGGGGAAGGAAATTGGAGAAAGCTTTCCAAAAGAGCTGGTTTGAAACGAAGTGGGAGGAGTAGCAGACTCAGATGGTTGAATTATATTAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATTAGACTACATAATCTCCTAGGCAacagATGGTCCCTCATTGCGGGGAGATTACCGGGGCGAACAGACAACGAGATCAAGAACTATTGGAATActcatttgagaaaaaaaatagagaagcaCAACCATAACAAGACCCTATTACTTCATTCTAATAAAATCCCAAGGAAATCAAGAGTTGAATCTAAAGGGTGCACGAAAAACTCTTTGGATATCAATAATACTACAACGTCACCCCTCCCAGCCCAAGTTATGGTGCCAAACCATGCAGCCAATGATTCAGCCAAcacaataaataatgtaattgttaCAACATGCGGGGATAGCCACAACCCTTTAGCGTCCACCCCACAAGATGGCCATGACAATTGCTCTGCTGGTTTCCCCAAACAATTGGACATACGTGACCAGCTAATAATACCATATGAAGATTGCCATTGTTGTAATGGATGTGCTAGTGCTGAAATACTGGAGGACTCTGGAGATGAAGCGTGCTGGCTTGTTGATTCAATAGGCCAAGCATGGCATGAAAGTTGGAAACTCATCGACTTCTTTCCACCAGATCAAGTGgcgaattttttttctttgtga 828 0.3973 MGRKGSCENPDVVNRGTWSAEEDKILMNYVQVHGEGNWRKLSKRAGLKRSGRSSRLRWLNYIKPDIKRGNISSDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKKIEKHNHNKTLLLHSNKIPRKSRVESKGCTKNSLDINNTTTSPLPAQVMVPNHAANDSANTINNVIVTTCGDSHNPLASTPQDGHDNCSAGFPKQLDIRDQLIIPYEDCHCCNGCASAEILEDSGDEACWLVDSIGQAWHESWKLIDFFPPDQVANFFSL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1129 275 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Ssu7g1129 275 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu7g1129 275 SMART sant 67 115 IPR001005 -
Ssu7g1129 275 SMART sant 14 64 IPR001005 -
Ssu7g1129 275 CDD SANT 72 113 IPR001005 -
Ssu7g1129 275 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 262 - -
Ssu7g1129 275 Gene3D - 15 67 - -
Ssu7g1129 275 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 262 - -
Ssu7g1129 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 62 IPR017930 -
Ssu7g1129 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu7g1129 275 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu7g1129 275 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Ssu7g1129 275 Gene3D - 71 144 - -
Ssu7g1129 275 ProSiteProfiles Myb-like domain profile. 14 62 IPR001005 -
Ssu7g1129 275 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1129 Ssu-Chr7 25041009 25042145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1129 13 117 MYB Transcription Factor Family AT3G13540 70.476 9.28e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1129 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1129 K09422 - gmx:547459 297.36