Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1128 atgggAAGAAAGGCCAATTGTGCCAATCACGATGCTGTGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCATGGAGAAGGAAAATGGAGAGAGCTTTCCAAAAGAGctgGCTTGAAAAGATGTGGGAAGAGTTGCAGACTCCGATGGTTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATCTCTTCGGATGAAGAAGATCTCATTATCAGACTACACAAGCTCTTAGGCAATAGATGGTCTCTCATTGCGGGACGCTTACCAGGGCGAACAgacaatgaaattaaaaactattggAATACTtatttgagaaagaaaatagagcaGAAGCACAACCATAACAAAATTCCTGGCCATAACAACAATATTCCtatcaaattaagaattgaaTCTCCGGGGTGCTCAAAGAACTCCTTGGGTACTGTTCTTGATCCTACAAAATCCCCTCACCCAAAGATGATTAAACCAAAATCAATGAAGTGTACCAAGGTTATGATGCCAACTCGAGCAGTCAGTGATTCAGTCAACAcaatgaatttaattacaacGAGCTGGGACAATCAGAACCCTTCTGCATCTATGCCACAAGATGACCATAATCATTGCTTATCAGGTGTCCTCCAAGATTTTGACATCAATGACTTGTTAATGTCGTGTGACTATGAGGATGATTGTCGTTTTAATGGATATGCTTGTGTCGAAATACCTGAACATATTTTTGAAGATGAAACTTGGAggcttgatgatttgatgggcGAAGCATGGTATGAGAATTGGAAGATTGACACCTATTTTCCACAAGAACAAGATATgagtttttcttcattttaa 861 0.3508 MGRKANCANHDAVNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKIEQKHNHNKIPGHNNNIPIKLRIESPGCSKNSLGTVLDPTKSPHPKMIKPKSMKCTKVMMPTRAVSDSVNTMNLITTSWDNQNPSASMPQDDHNHCLSGVLQDFDINDLLMSCDYEDDCRFNGYACVEIPEHIFEDETWRLDDLMGEAWYENWKIDTYFPQEQDMSFSSF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1128 286 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu7g1128 286 CDD SANT 72 113 IPR001005 -
Ssu7g1128 286 Gene3D - 15 67 - -
Ssu7g1128 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu7g1128 286 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 285 - -
Ssu7g1128 286 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 285 - -
Ssu7g1128 286 SMART sant 14 64 IPR001005 -
Ssu7g1128 286 SMART sant 67 115 IPR001005 -
Ssu7g1128 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu7g1128 286 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu7g1128 286 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu7g1128 286 Gene3D - 71 135 - -
Ssu7g1128 286 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu7g1128 286 CDD SANT 17 62 IPR001005 -
Ssu7g1128 286 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1128 Ssu-Chr7 24970657 24972408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1128 7 117 MYB Transcription Factor Family AT3G13540 71.171 5.85e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1128 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1128 K09422 - gmx:100794570 494.582