Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1126 ATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTTCAGAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTGTGTCCCGAGCCCACTTGCGTCCATCATGACCCATCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTTTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGTACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCTCAAGAGAGTGCAAGATACCCCGGTGGCTTAAACCCTTTGCAGGACTCATTTGTTTGGCACAAACCACTCGAGTTTAGGCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAATCAGACCCAAACAGCCACTAA 540 0.4611 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPGGLNPLQDSFVWHKPLEFRPIPSGYPTFPSSKSDPNSH 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1126 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Ssu7g1126 179 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Ssu7g1126 179 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Ssu7g1126 179 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 146 - -
Ssu7g1126 179 Gene3D Classic Zinc Finger 2 55 - -
Ssu7g1126 179 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Ssu7g1126 179 SMART c2h2final6 47 77 IPR013087 -
Ssu7g1126 179 SMART c2h2final6 6 28 IPR013087 -
Ssu7g1126 179 SMART c2h2final6 82 102 IPR013087 -
Ssu7g1126 179 Gene3D Classic Zinc Finger 60 139 - -
Ssu7g1126 179 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1126 Ssu-Chr7 24937781 24939860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1126 1 147 IDZ Gene Family AT2G02070 92.517 1.37e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1126 zf-C2H2_jaz 7.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1126 K25870 - gmx:100795090 315.079