Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1120 ATGGGGCACTGTAACTGCATGTTGGCGCTGTGCCCTCTTGTCCTTCTTCTCAGTCTGCCTTCCCTGTCCGGCGCCGTCCACGATCTCCGATTCAATTTCCCGGCGAAGAAGCTGATCAGAGACCTGAACCTTTTCCCTCCGGAAGATGTCAACATCGTTTGCCACCCCAATTCTCACGCCAACAAGATCGTGGAGAAACCGCTCAGGTTCCCGAACTTAGTGCCTCCAGACTCTGGAGTTTCCCTCGACGATTTGGCTCACCGCGCTGGCTATTACCCTATTCGTCATTCTCATGCTgccagGATGTTCTACTTTTTCTTTGAATCACGGAACAGCAAGAAGGATCCTGTTGTGATTTGGTTGACTGGGGGCCCTGGTTGTAGCAGTGAATTGGCTGTGTTTTATGAAAATGGCCCTTTCAAAATTGCTGACAACATGTCCCTTGTGTGGAATGATTATGGTTGGGATAAGGTGTCTAACCTTCTGTATGTTGACCAACCAACTGGCACTGGCTTTAGTTACAGCACTGACAAGCGCGACATTCGTCATGATGAAGAAGGTGTGAGCGATGACCTGTATGACTTTTTGCAGGCCTTCTTTGCTGAACATCCTGAGTATGCAgagaatgacttttttattaCGGGTGAATCATATGCGGGACATTATATTCCAGCTTTTGCAGCTCGTGTCCATAGGGGAAACAAAGCTAAAGAAGGAATTCATATAAACCTAAAGGGATTTGCCATTGGTAATGGGCTTACCGATCCTGGAATTCAGTATAAAGCTTATGCGGATTATGCACTGGACATGGGCATAATTCAGCAGGCTGACTATGATCGCATCAACAAAGTGATGGTTCCACCTTGCGAAATGGCAATAAAACTGTGTGGCACTGGTGGAAAAATCGCATGCACAGCTTcatattttgtttgtaatacCATATTCAACTCCATCTTGTCACATGCTGGTGATATCAATTATTATGACATCAGAAAGAAGTGTGAGGGGAGGCTTTGCTATGATTTTTCAAACATGGAGAAATACTTGAACCAAAAATCTGTTCGGGATGCACTAGGGGTTGGAGATATTGCTTTTGTGTCTTGTAGTTCTACAGTTTATCAGGCTATGCTGGTGGATTGGATGAGGAATCTTGAAGTGGGTATTCCTGCCCTTCTTGATGATGGAATCAATTTGCTTGTGTATGCTGGGGAATTTGATCTCATCTGCAACTGGCTTGGTAATTCAAAATGGGTTCATGCCATGGAGTGGTCTGGCCAGAAAGAATTTGTGGCCTCACCCGAAGTTCCTTTCACAGTTGATGACTCTGAAGCTGGATTATTGAAGAATTATGGacctttaaatttctttaaggtcCATGATGCGGGTCACATGGTTCCGATGGATCAGCCAAAGGCTTCGTTAGAAATGCTGAAGAGGTGGACTCAGGGAACCCTTTCTAAATCTGGAGCTGATGAGGAGAAATTGGTTGCTGAGATGTAA 1500 0.438 MGHCNCMLALCPLVLLLSLPSLSGAVHDLRFNFPAKKLIRDLNLFPPEDVNIVCHPNSHANKIVEKPLRFPNLVPPDSGVSLDDLAHRAGYYPIRHSHAARMFYFFFESRNSKKDPVVIWLTGGPGCSSELAVFYENGPFKIADNMSLVWNDYGWDKVSNLLYVDQPTGTGFSYSTDKRDIRHDEEGVSDDLYDFLQAFFAEHPEYAENDFFITGESYAGHYIPAFAARVHRGNKAKEGIHINLKGFAIGNGLTDPGIQYKAYADYALDMGIIQQADYDRINKVMVPPCEMAIKLCGTGGKIACTASYFVCNTIFNSILSHAGDINYYDIRKKCEGRLCYDFSNMEKYLNQKSVRDALGVGDIAFVSCSSTVYQAMLVDWMRNLEVGIPALLDDGINLLVYAGEFDLICNWLGNSKWVHAMEWSGQKEFVASPEVPFTVDDSEAGLLKNYGPLNFFKVHDAGHMVPMDQPKASLEMLKRWTQGTLSKSGADEEKLVAEM 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1120 499 ProSitePatterns Serine carboxypeptidases, serine active site. 213 220 IPR018202 GO:0004185
Ssu7g1120 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 163 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 174 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 199 224 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 488 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 Gene3D alpha/beta hydrolase 77 496 IPR029058 -
Ssu7g1120 499 Pfam Serine carboxypeptidase 85 482 IPR001563 GO:0004185|GO:0006508
Ssu7g1120 499 SUPERFAMILY alpha/beta-Hydrolases 86 484 IPR029058 -
Ssu7g1120 499 PANTHER CARBOXYPEPTIDASE 24 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1120 Ssu-Chr7 24822083 24826652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1120 K16298 - gmx:100805730 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1595 4 27327842 27330538 Ssu7g1120 7 24822083 24826652 ECH
Ssu7g1120 7 24822083 24826652 Ssu7g1120 7 24822083 24826652 ECH