Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1100 ATGTGTAGGTGGATCACCAACTCAAAGCATTTGTGGGTGCCCGTTGTGATTTTGAGCCTGTTCGTTGGGTTGGTGCAGTGCCAACAAGTGAATGACTACGACCAAATTGATAGCCCTGCTGTTCTTCCCCTCATTACTCAGCTTGTGTATGGTCAAATCTCCAATTTGACAACAATGCTCGGTCAGGAAATAAGCAGGCAGTCCAGTTTTTGTGTCAAAGATCCGGATGCTGATTGGAATCaagcatttaatttttcatctgaTTTGGGCTTCTTGGCATCTTGCATTAAGAAGACTAAAGGAGATATTGCAAAACGTTTATGTACAGCAGCAGAAGTAAAGTTTTTCTTAAATAGTTTATTGGGGAAAACTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTCTCTGGTTGCGAGCCAGGGTGGGCATGTAGTGTTCACTCAAGCCAGAAGGTCGACCTTAAAAATTCAGAGGAGATACCTGCAAGAACTTCAAACTGCCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGTCCTCTTGCTACACTCAACAAAACAACTGGCATATGCGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAACCATACCTGTGGTGGGGCAAATGTTTGGGCTGATGTTAGTAGCAGTAGTGAGATATTTTGCTCTGCTGGATCATATTGTCCAACAACCACAAAAAGAATTCCTTGCAGTAGTGGACATTACTGCAGGATGGGCTCCACATCTGAGAAAGGATGCTTCAAGTTGAGTTCTTGTAATTCAAACACAGCAACCCAAAATATGCGTGCATATGGAATTATGCTGATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTCACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCGCGCCAAAGATGGCAATTTGCAAAAGATGCCACTAAGAAGGGTGCAATTGGGCTGCAAGCTCAACTATCACGCACCTTCAAGAAGGATGCAGCAAATCTgggaaaagttaaaattttgaatcaagCAACTTCTGAAGCAGAAGTTGAATTGTTGTCATATTCACGACCTACAACTTCAAGCATGGTTGCAAGTTCCTCTGTGGCACCaaaggaaaagggaaaagaatCCAGTGGTCTAATGCAGATAATacatgaaattgaaaatgatccAGATATTAATGACAACCTTAATACAGAAATAGGAACTAGAGATAAAAGTGCTACAGAAAATATGTCAAAGGGAAAACAACCGCATACTCATAGCCAAATTTTTAAGTATGCATATTCTCAACTTGAAAAAGAGAAGGCTcagcaaaaagaaaacaagaaactTACCTTCTCAGGAGTAATTAAAATGGCTACAAACactgaaaaaaggaaaaggccTTTAATTGAGATTTCTTTCAAGGATCTGACTCTTACATTGAAAGCTCAAAACAAGCAAATATTGAGATATGTTACTGGGAAAATTAAACCTGGCCGCATCACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGTTCGGTCACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATCCACTCCTTTAAGAAAATTACTGGCTTTGTACCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGgCTATCTGCTGACCTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGTAATTCCTTGGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTCTTAATCTTGGATGAACCCACGTCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTGAGACGTGAAGCTCTTGAGGGAGTAAACATTTGCATGGTGGTTCACCAACCCAGTTATGCTTTGTTCAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAGGAAAGTTGAAGAATACTTTTCAGGCCTGGGGATCAATATTCCGGAGCGGATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGAATAGCAGCACCCAGTGGAAGCTCAGGACTCAGTTATAAAGAACTGCCAATTAGATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGAATGCAGTTCAATTTGATATATCCCAGAGTGTCAATTCAGCTAATGAAATAGATCCCAATGGATCTGGTCATGTGGAAAAAACTTTTGCTGGAGAATTATGGCAAGATATGAGAAACAATGTGGTACTGAGGGGGGAGAAGATaagactcaatttttttaaatccaaGGATTTATCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTACGAGAAGCTAGGATCCAAGCCATTGATTATCTTATTTTGTTACTGGCTGGAGCCTGCTTAGGATCGCTTACCAAAGCAAGTGATCAAACGTTTGGTGCAGCTGGCTACACCTATACGGTGATTGCTGTATCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCCCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGcttattttctctctaaagACACAATTGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTTTCTATGTTCTATTTCTTCACCAATCCGAGATCAACTTTTGCAGATAATTATGTTGTGCTGCTTTGTCTTGTATACTGTGTCACTGGCATAGCATATGCATTGTCCATATTTTTTGAACCTGGCGCTGCCCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACTCTCATTGCAACACAACCAAAAGAtagtaaaattttgaagaatatAGCTAATTTGTGCTACTCTAAGTGGGCTTTACAAGCATTAGTTGTTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAAGTGGCTATAATCTTCATGATTGGAGTTTGTGCATATCCATCCTCATTATTATGGGTGTAATTGGCCGGGCAATAGCATTTTTCTGTATGGTCACCTTCCAAAAGAAGTAA 3342 0.3941 MCRWITNSKHLWVPVVILSLFVGLVQCQQVNDYDQIDSPAVLPLITQLVYGQISNLTTMLGQEISRQSSFCVKDPDADWNQAFNFSSDLGFLASCIKKTKGDIAKRLCTAAEVKFFLNSLLGKTTSANYLKPNKNCNLTSWVSGCEPGWACSVHSSQKVDLKNSEEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANVWADVSSSSEIFCSAGSYCPTTTKRIPCSSGHYCRMGSTSEKGCFKLSSCNSNTATQNMRAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWQFAKDATKKGAIGLQAQLSRTFKKDAANLGKVKILNQATSEAEVELLSYSRPTTSSMVASSSVAPKEKGKESSGLMQIIHEIENDPDINDNLNTEIGTRDKSATENMSKGKQPHTHSQIFKYAYSQLEKEKAQQKENKKLTFSGVIKMATNTEKRKRPLIEISFKDLTLTLKAQNKQILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCSVTGSILINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGSARKVEEYFSGLGINIPERINPPDYFIDILEGIAAPSGSSGLSYKELPIRWMLHNGYPIPLDMRQNAVQFDISQSVNSANEIDPNGSGHVEKTFAGELWQDMRNNVVLRGEKIRLNFFKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDSKILKNIANLCYSKWALQALVVANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILIIMGVIGRAIAFFCMVTFQKK 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1100 1113 Gene3D - 504 741 IPR027417 -
Ssu7g1100 1113 Pfam ABC-2 type transporter 704 1113 IPR043926 GO:0140359
Ssu7g1100 1113 SMART AAA_5 532 724 IPR003593 -
Ssu7g1100 1113 ProSitePatterns ABC transporters family signature. 647 661 IPR017871 GO:0005524
Ssu7g1100 1113 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 35 1110 - -
Ssu7g1100 1113 Pfam ABC transporter 525 675 IPR003439 GO:0005524
Ssu7g1100 1113 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 506 747 IPR003439 GO:0005524
Ssu7g1100 1113 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 1110 - -
Ssu7g1100 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 739 IPR027417 -
Ssu7g1100 1113 CDD ABCG_EPDR 504 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1100 Ssu-Chr7 24371142 24380073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1100 503 725 Calmodulin-binding Proteins AT2G36910 25.207 8.91e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1100 - - gmx:100775464 2016.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2454 7 47742927 47755065 Ssu7g1100 7 24371142 24380073 ECH
Ssu7g1100 7 24371142 24380073 Ssu7g1100 7 24371142 24380073 ECH