Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1087 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCACTGGCACCGGAATTTCGCCCTACGGACACTGAATTTGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCGTTGCCCAAACCTTCAAAGAAATATGTCTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGACCAGATAACAGTTCATTAGGTGTTTGTAATTCGTCGAAAACTGGTTCCGGGGATGGTGGTAGTGATGGGGTGTTGCGAGCTGTGTTTACTACAAGACATCAAGAACTGGGCCAGAGTCAGTGTGTGAAGAAAGCCAAAGGGGCAGTGCAGAATCCACTGTCAGGTGTTCATAAGCAAGTGTGGCAAAGTGGGGAGGTTTATTCTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCGAGAAGCGTGCTGGGTCCGGTGAAGGATGTTTCTCCACTGGTTATAGAGTCTATGTTTTGGAAGGCATCTTTAGAGAAGCCAATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATGGTCATAGAAGGCGAAGAAAAAGGAATTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAATGGGTTGCGTAAGAGATACCCAAACTGATGAGACTAAGGTTGCTTCTGTCCAAAGTCATGCAGACACATGTTTACAGATGACCAAATCAGCTACTACTGTGTCAACATTTTCATTGAACGAAGATTCACAATCTTCTAAGGAAAAGAGTTCAGATGCCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTGCACGCTCGTCTGGCTCACTAACACGTTTTATGCCAGATGATATTCCTGGCGTCACTTCACCTATGGTATATATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATTCGCACTGAGGGTTATGGTGGTAAAATTGATCACTTAGCCGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCTCCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACACAGAACCCTGGTGAATTTGTAGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGCGAAGCTGCAAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAGGCCGCAGTACGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCCTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCGTAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTGCTATCTGTCCTTCTTAGAAAGGAAGCAACTAAAAAAGCTGTTTTATGGAGTGCTGATTTACTGCCAGATTCCAGCAAAGATTTTTGGTTGCCTGATTTAACTTCTACTACTGGAACCTCTATGGCAGACATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTCACTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATTTGTCTAATTTAGATTTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATTCAACCAACTGAGAAATTGACAGTGGAACATCTTCCTGATAATCATCATCTAGTTCAAGTTTCCTCTCTGGACTCTACTGCTTGCATTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCTGAACTTTCGTCAGTAAAGGAGTTGCCAGATCAATCATTGGACAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTGAGGCCTCGCATTTTCTGCCTGGAGCATGCTATTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCGCCAGAAAATTTGACTCTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACAGTATTGTGTCCATGCAAGAAATAACTCTCCATCTAAACAAGTTCCTTGGACACTAGGGACGCTGTTCTATGATAAACATCCTGCTTCAAAATTTTTAGCTTTAAATTGGCAGTCACGGAGATCTCGGTCAAAAAGGTCAAGTCGTTTAGCTCAGACTAAACCCTGTGACAGCATTCAGAGAAAGAAGGATGATCAGCTGAATGGAAGAATAGATGACTCCACTGCTGAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTTAAAGCAAAGGTGTTTGCCTGTAGCAAGCATGGTCTCTGAATTCCAAGAGAAGTCCAAAAATGTGTCAGCTACTTTGAGTGGGGATCATTATAATTGTGTTTCTAAAACTGAGCTTGAAGCTAAGAATTTCAGGAGTGATTGTGCATTGTCACATGTCTCTGCTTCTACTGAAATGTCTCCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCACTAGTACGAGATTGAATGCTGCTAAGTCACAACTTTCAAATTCCATTCCTGAtcatattttaatgattgaaaAAGTTGGAGCAGAGATTGAGAATCAAACCGTGCAAGAATCAGATGTAGACAGAAATAGTGATTTAACACTCAGTCATTCTAAGATGCATTGCAGTACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAGATTGTCAGGACAAGAAATATTCTAGCTCACTTACAAATTCAACAGATAGAAATATTGAAATGATTGGAAAGATTGAAATTGCAGAAGAAGTTATCATTGATAGCAAGTGTAATAGCTTAAATTTGGATGATGAAAGGCATCAAGAATATCAGTCTACGTGCAAAAGTAACAATGAGCAAGCTGTTTCATTGGTAAATCAATCTACTCTTGCCTCTATGGATGGAAGTTTTGAAAatccaaataataattataccacAGAAAGAATTAGCAATCCTGATTTCTTAGAAAAGACAACTGAGGAAGAAATTGATTCTTTAAGTGAAAGGGACAAGGAACCTCTAATTGATGACAGACCAATTAGCGAACATACTCCAAAAGAAGTTTGTGAAGTTCAAAGAGAGCTTTATGCTTCTGCAGACTTGCATAATACCACAATCTTGGATGCTGAGATGCAACAAGAAACTGAGGTTGGAAAAGATAGCAGAAGGGAAATAAATCAGTCCATTCATGTTTCAGCACAACAATGGTGTGAATTTACAGAAGAGGAATATGCTAAAGGGTTGGATGATGAAGTGATTCCAGAGTCTGTGGAGCAGTGTCAGAtcgaaaataagaataaaagtaatGAGGAACCTGTTTCTATTTATGTTGCAAAAGGTGAAAATACAAGCATAACTAAATCAGAATTAGGTTGTTCTGAAGTTTCAGTGGAAACCTGTCCTAAAGAAGACTCCtgtattcaatttatttcaGATGAAGACAAAGAAATGGAGATCCAGTCAATTAATAGAATTGATGAGGAACTTTGCTCTGGCACTGACACATCGTTAAAGGACTCTTTATCAATCCAGGAATGTTCTAAAATTGAGATAGAGATGCTTGTTAGAGAAAATGTAAATGGAAGCAAAGTTGATTTATCACAAGATAATAGGGAGCTGGAAAGCTGTGAGTTGACTACAGCAGTTCCCAGATCAAATGCtgggaagaaaaagaagagggaaGTGGAACGTACAACCAAGAACCAATCCAATTGTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGAAAGATTGCCGCTGGCAAAAGTGGGGCGGAAATCAACCAAATTGACAAGGAAAACCAGGTGGCTAAAAGGGCACGGAGATCTTCTGAAGTTTTGGTTcctcacaaaaataaaaaagattatgttaaaaagccCCATAAGTGTGACCTTGATGGTTGTCGAATGAGTTTCAAGACTAAGGGTGAGTTACAGTTGCATAAACGAAACCTTTGCCCCCATGAAGGGTGTGGTAAGAAGTTCAGCTCTCACAAATATGCTCTACTTCACCAGCGTGTTCATGATGATGAGAGACCGCTTAAGTGCCCATGGAAAGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTACATACCGGGGAGAAGCCTTATCAATGCAAGGTCAAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCATAGACGGAAAACGGGGCACGTTGCGCAGCCTCCTGCTTGA 4623 0.3991 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSSKTGSGDGGSDGVLRAVFTTRHQELGQSQCVKKAKGAVQNPLSGVHKQVWQSGEVYSLEQFESKSKSFARSVLGPVKDVSPLVIESMFWKASLEKPIYVEYANDVPGSAFEESKGQFHYGHRRRRKRNYYKSRLDSSDCKQTEMGCVRDTQTDETKVASVQSHADTCLQMTKSATTVSTFSLNEDSQSSKEKSSDASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGKIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSVLLRKEATKKAVLWSADLLPDSSKDFWLPDLTSTTGTSMADMSNISSAEKSSHYLLDEMSLYMENLSNLDFGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLTVEHLPDNHHLVQVSSLDSTACIHSSISRDLSVSELSSVKELPDQSLDKCNKCWNTSSKFLRPRIFCLEHAIQIVEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPENLTLIDLAIDGEEHDECEDWTSKLGINLQYCVHARNNSPSKQVPWTLGTLFYDKHPASKFLALNWQSRRSRSKRSSRLAQTKPCDSIQRKKDDQLNGRIDDSTAEKKLIQYSRRKFKLKQRCLPVASMVSEFQEKSKNVSATLSGDHYNCVSKTELEAKNFRSDCALSHVSASTEMSPMHPEIQIAEMPTSTRLNAAKSQLSNSIPDHILMIEKVGAEIENQTVQESDVDRNSDLTLSHSKMHCSTSVSEICGKESQDCQDKKYSSSLTNSTDRNIEMIGKIEIAEEVIIDSKCNSLNLDDERHQEYQSTCKSNNEQAVSLVNQSTLASMDGSFENPNNNYTTERISNPDFLEKTTEEEIDSLSERDKEPLIDDRPISEHTPKEVCEVQRELYASADLHNTTILDAEMQQETEVGKDSRREINQSIHVSAQQWCEFTEEEYAKGLDDEVIPESVEQCQIENKNKSNEEPVSIYVAKGENTSITKSELGCSEVSVETCPKEDSCIQFISDEDKEMEIQSINRIDEELCSGTDTSLKDSLSIQECSKIEIEMLVRENVNGSKVDLSQDNRELESCELTTAVPRSNAGKKKKREVERTTKNQSNCDNFIRSPCEGLRPRAGKIAAGKSGAEINQIDKENQVAKRARRSSEVLVPHKNKKDYVKKPHKCDLDGCRMSFKTKGELQLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMTFKWAWARTEHIRVHTGEKPYQCKVKGCGLSFRFVSDFSRHRRKTGHVAQPPA 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1087 1540 MobiDBLite consensus disorder prediction 834 861 - -
Ssu7g1087 1540 ProSiteProfiles Zinc finger C2H2 type domain profile. 1448 1477 IPR013087 -
Ssu7g1087 1540 ProSitePatterns Zinc finger C2H2 type domain signature. 1450 1472 IPR013087 -
Ssu7g1087 1540 Gene3D Classic Zinc Finger 1446 1532 - -
Ssu7g1087 1540 SMART cupin_9 293 462 IPR003347 -
Ssu7g1087 1540 MobiDBLite consensus disorder prediction 846 861 - -
Ssu7g1087 1540 MobiDBLite consensus disorder prediction 265 293 - -
Ssu7g1087 1540 SUPERFAMILY Clavaminate synthase-like 294 459 - -
Ssu7g1087 1540 ProSiteProfiles Zinc finger C2H2 type domain profile. 1478 1507 IPR013087 -
Ssu7g1087 1540 Gene3D Cupin 9 466 - -
Ssu7g1087 1540 Pfam jmjN domain 17 50 IPR003349 -
Ssu7g1087 1540 SMART c2h2final6 1478 1502 IPR013087 -
Ssu7g1087 1540 SMART c2h2final6 1448 1472 IPR013087 -
Ssu7g1087 1540 SMART c2h2final6 1508 1534 IPR013087 -
Ssu7g1087 1540 SMART c2h2final6 1425 1447 IPR013087 -
Ssu7g1087 1540 ProSitePatterns Zinc finger C2H2 type domain signature. 1510 1534 IPR013087 -
Ssu7g1087 1540 ProSitePatterns Zinc finger C2H2 type domain signature. 1480 1502 IPR013087 -
Ssu7g1087 1540 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1529 - -
Ssu7g1087 1540 SUPERFAMILY beta-beta-alpha zinc fingers 1488 1530 IPR036236 -
Ssu7g1087 1540 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1529 - -
Ssu7g1087 1540 SUPERFAMILY beta-beta-alpha zinc fingers 1449 1485 IPR036236 -
Ssu7g1087 1540 ProSiteProfiles Zinc finger C2H2 type domain profile. 1508 1539 IPR013087 -
Ssu7g1087 1540 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Ssu7g1087 1540 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Ssu7g1087 1540 SMART JmjN_1 15 55 IPR003349 -
Ssu7g1087 1540 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1087 Ssu-Chr7 23945213 23956867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1087 1 904 C2H2 Transcription Factor Family AT5G04240 56.250 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1087 JmjC 3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1087 - - gmx:100799861 2682.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1087 7 23945213 23956867 Ssu7g1087 7 23945213 23956867 ECH