Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1086 ATGAAGGTGAAACTTCTCAAATGCTGGCTAAGGGAATTTTCTAAATTCGGAAACGTAAGAGctaattttctcaaatatgCAATTGGGGAACATATTCGCATATTGGTTACATGTCGTTCCTCGCTTGAGAAGTCATACTCATACGTACCCAAAGATGTCCCAAAAGGTCACCTAGCTGTCTACGTTGGTGAGGATTGCAAGAGATTTGTCATCAAGGTAGGTATGCTCAACCATCCTCTCTTCCAGGCCTTGCTGGACCATGCAGAGGACGTGTTTGGATTCACCAATGGTTCTAAACTCCGCATCCCTTGCAATGAGAACATTTTCCTTCACATTCTTCCTAATGCCGTTGATCTTGTCCAGGATCGGAGGCTCTTCAATTGTTTCTAG 390 0.4231 MKVKLLKCWLREFSKFGNVRANFLKYAIGEHIRILVTCRSSLEKSYSYVPKDVPKGHLAVYVGEDCKRFVIKVGMLNHPLFQALLDHAEDVFGFTNGSKLRIPCNENIFLHILPNAVDLVQDRRLFNCF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1086 129 Pfam Auxin responsive protein 44 113 IPR003676 GO:0009733
Ssu7g1086 129 PANTHER SMALL AUXIN-UP RNA-RELATED 2 129 - -
Ssu7g1086 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 129 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1086 Ssu-Chr7 23932741 23933130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1086 52 113 Calmodulin-binding Proteins AT4G34750 50.000 1.21e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1086 - K14488 mtr:MTR_1g094750 155.221