Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1082 ATGGAATATTCCAAGGAAAATTGTAGCAATGGCAATGGGTCGTCGAACCTTTGCAATAGTAGCACCGACCCACTTAACTGGGGCATGGCCGCGGATGCTTTGAAAGGCAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGACTACCGTAAGCCGGTGGTGATGTTAGGTGGCAGGAGCCTCACCGTGTCTCAGGTGGCGGTGGTTGCCACTCGCCACAACGGCGGTGTGACGGTGGAGCTGGCCGAGGAAACCCGCCACGGTGTCAAGACCAGCAGTGATTGGGTCATTGATAGCATGGTCAAAGGTACTGATAGCAATGGAATCACCACAGGGTTTGGTGCAACCTCAAACAGGAGAACCAAGCAAGGTGGTGCTCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGTATTTTTGGTAATGGCACTGAGTCTTGTCACACCTTACCTCACTCAACTACAAGAGCAGCCATGTTAGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCCATCACCAAGTTTTTGAACCATAACATAACCCCATGCCTCCCTCTACGTGGCACAATCACTGCATCAGGTGACTTGGTCCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAATTCCAAGTCTATTGGACCCAATGGACAAGTCCTTAATGCTAAAGAAGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTGGGGTCTGGCTTGGCTTCCATGGTCCTTTTTGAGGCAAACTTACTAGTCATCCTCTCAGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGATCACCTGACCCATAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATATTAGATGGAAGTTCATATGTTAAGGCAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGACATGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTGAATGATAACCCCTTGATTGATGTTTCGAGGAATAAGGCACTTCATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCTATTGGAAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTACTATAATAATGGTTTGCCTTCAAATTTAACAGCTAGTCGCAACCCAAGCTTGGATTATGGCTTCAAAGGGGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGTTTAATTTCATCAAGAAAGACAGCCGAAGCAATAGACATATTGAAGCTCATGTCCTCCACATTCCTAATTGCATTGTGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTCAAGAATACTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAATTACATCCTTCTAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGACCGTGAATATGTCTTTGCTTACATTGATGACCCATGCAGTGCAACCTACCCTCTAATGCAAAGGTTGAGATCAGTCTTAGTTGATCATGCATTACAAAATGGTGACAAAGAGGCAAATTCCAGTAcctcaatttttcaaaagataagAGCCTTTGAGGAAGAACTCAAGGCCATTTTACCTAAAGAGGTGGAAAGTGCTAGGATTGACATTGAGAATGGAAATCCCACTATTCCTAACCGAATAAAGGAATGCAGGTCTTACCCATTATATAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTAACAGGTGAGAAAGTTAGGTCACCTAGTGAGGAATGTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTTATTGATCCTATGTTGGATTGTTTAAAGGGGTGGAATGGTGATCCTTTACCAATATGCTAA 2148 0.4283 MEYSKENCSNGNGSSNLCNSSTDPLNWGMAADALKGSHLDEVKRMVEDYRKPVVMLGGRSLTVSQVAVVATRHNGGVTVELAEETRHGVKTSSDWVIDSMVKGTDSNGITTGFGATSNRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSTTRAAMLVRINTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMQRLRSVLVDHALQNGDKEANSSTSIFQKIRAFEEELKAILPKEVESARIDIENGNPTIPNRIKECRSYPLYKFVRENLGTTLLTGEKVRSPSEECDKVFTALCEGKFIDPMLDCLKGWNGDPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1082 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Ssu7g1082 715 CDD PAL-HAL 59 525 IPR001106 -
Ssu7g1082 715 Pfam Aromatic amino acid lyase 61 538 IPR001106 -
Ssu7g1082 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Ssu7g1082 715 Gene3D - 14 261 IPR024083 -
Ssu7g1082 715 SUPERFAMILY L-aspartase-like 23 715 IPR008948 GO:0003824
Ssu7g1082 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Ssu7g1082 715 PANTHER HISTIDINE AMMONIA-LYASE 11 715 IPR001106 -
Ssu7g1082 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 11 715 - -
Ssu7g1082 715 Gene3D - 528 649 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1082 Ssu-Chr7 23830893 23835073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1082 8 715 Monolignol Biosynthesis Gene Families AT3G53260 80.986 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1082 K10775 - gmx:100818777 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2459 7 47830331 47834525 Ssu7g1082 7 23830893 23835073 ECH
Ssu4g1015 4 16246420 16250527 Ssu7g1082 7 23830893 23835073 ECH
Ssu7g1082 7 23830893 23835073 Ssu7g1082 7 23830893 23835073 ECH