Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1081 ATGGAATATTCCAAGGAAAACCACAGCTACGGCAATGCCAATGGGTCGTTGAACCTTTGCAATGGTAGCACCGACCCACTTAACTGGGGCATGGCCGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGTAAGCCGGTGGTGATGTTAGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCGCCCACCACAATGGCGGCGTGACGGTGGAGCTGGCCGAGGAGACCCGCCACGGTGTCAAGGCGAGCAGTGATTGGGTCATTGATAGCATGGTGAAGGGCACTGATAGCTACGGGGTCACCACTGGGTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGAGGTGCTCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGTATTTTTGGTAATGGCACTGAGTCTTGTCACACCTTACCTCACTCAACTACAAGAGCAGCCATGTTAGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCCATCACCAAGTTTTTGAACCATAACATAACCCCATGCCTCCCTCTACGTGGCACAATCACTGCATCAGGTGACTTGGTCCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAATTCCAAGTCTATTGGACCTAATGGACAAGTCCTTAATGCTAAAGAAGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTGGGGTCTGGCTTGGCTTCCATGGTCCTTTTTGAGGCAAACTTACTAGTCATCCTCTCAGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGATCACCTGACCCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATATTAGATGGAAGCTCATATGTTAAGGCAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGACATGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTGAATGATAACCCCTTGATTGATGTTTCGAGGAATAAGGCACTTCATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCTATTGGAAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTACTATAATAATGGTTTGCCTTCAAATTTAACAGCTAGTCGCAACCCAAGCTTGGATTATGGCTTCAAAGGGGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGTTTAATTTCATCAAGAAAGACAGCCGAAGCAATAGACATATTGAAGCTCATGTCCTCCACATTCCTAATTGCATTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTCAAGACTACTGTGAGTCAAGTGGCCAAAAGAGCTCTCACAGTTGGCATCAATGGTGAATTACATCCTTCTAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGATCGTGAATATGTCTTTGCTTACATTGATGACCCATGCAGTGCAACCTACCCTCTAATGCAAAGGTTGAGATCGGTCTTAGTTGATCATGCATTACAAAATGGTGACAAAGAGGCAAATTCCAGTAcctcaatttttcaaaagataagAGCCTTTGAGGAAGAACTCAAGGCCATTTTACCTAAAGAGGTGGAAAGTGCTAGGATTGACGTTGAGAATGGAAATCCCACTATTCCTAACCGAATAAAGGAATGCAGGTCTTACCCATTATATAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTAACAGGTGAGAAAGTTAGGTCACCTGGTGAGGAATGTGATAAGGTATTTATTGCATTGTGTGAAGGGAAGTTTATTGATCCTATGTTGGATTGTTTCAAGGGGTGGAATGGTGATCCTTTACCAATATGCTAA 2154 0.4359 MEYSKENHSYGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEEYRKPVVMLGGKSLTVSQVAAVAAHHNGGVTVELAEETRHGVKASSDWVIDSMVKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSTTRAAMLVRINTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKTTVSQVAKRALTVGINGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMQRLRSVLVDHALQNGDKEANSSTSIFQKIRAFEEELKAILPKEVESARIDVENGNPTIPNRIKECRSYPLYKFVRENLGTTLLTGEKVRSPGEECDKVFIALCEGKFIDPMLDCFKGWNGDPLPIC 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1081 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Ssu7g1081 717 Pfam Aromatic amino acid lyase 63 538 IPR001106 -
Ssu7g1081 717 PANTHER HISTIDINE AMMONIA-LYASE 17 717 IPR001106 -
Ssu7g1081 717 SUPERFAMILY L-aspartase-like 25 717 IPR008948 GO:0003824
Ssu7g1081 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 717 - -
Ssu7g1081 717 Gene3D - 17 263 IPR024083 -
Ssu7g1081 717 CDD PAL-HAL 61 527 IPR001106 -
Ssu7g1081 717 Gene3D Fumarase/aspartase (Central domain) 264 711 - -
Ssu7g1081 717 Gene3D - 530 651 IPR023144 -
Ssu7g1081 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1081 Ssu-Chr7 23813302 23819179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1081 25 717 Monolignol Biosynthesis Gene Families AT3G53260 82.684 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1081 K10775 - gmx:100801470 1350.11