LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g1081	ATGGAATATTCCAAGGAAAACCACAGCTACGGCAATGCCAATGGGTCGTTGAACCTTTGCAATGGTAGCACCGACCCACTTAACTGGGGCATGGCCGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGTAAGCCGGTGGTGATGTTAGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCGCCCACCACAATGGCGGCGTGACGGTGGAGCTGGCCGAGGAGACCCGCCACGGTGTCAAGGCGAGCAGTGATTGGGTCATTGATAGCATGGTGAAGGGCACTGATAGCTACGGGGTCACCACTGGGTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGAGGTGCTCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGTATTTTTGGTAATGGCACTGAGTCTTGTCACACCTTACCTCACTCAACTACAAGAGCAGCCATGTTAGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCCATCACCAAGTTTTTGAACCATAACATAACCCCATGCCTCCCTCTACGTGGCACAATCACTGCATCAGGTGACTTGGTCCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAATTCCAAGTCTATTGGACCTAATGGACAAGTCCTTAATGCTAAAGAAGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTGGGGTCTGGCTTGGCTTCCATGGTCCTTTTTGAGGCAAACTTACTAGTCATCCTCTCAGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGATCACCTGACCCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATATTAGATGGAAGCTCATATGTTAAGGCAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGACATGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTGAATGATAACCCCTTGATTGATGTTTCGAGGAATAAGGCACTTCATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCTATTGGAAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTACTATAATAATGGTTTGCCTTCAAATTTAACAGCTAGTCGCAACCCAAGCTTGGATTATGGCTTCAAAGGGGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGTTTAATTTCATCAAGAAAGACAGCCGAAGCAATAGACATATTGAAGCTCATGTCCTCCACATTCCTAATTGCATTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTCAAGACTACTGTGAGTCAAGTGGCCAAAAGAGCTCTCACAGTTGGCATCAATGGTGAATTACATCCTTCTAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGATCGTGAATATGTCTTTGCTTACATTGATGACCCATGCAGTGCAACCTACCCTCTAATGCAAAGGTTGAGATCGGTCTTAGTTGATCATGCATTACAAAATGGTGACAAAGAGGCAAATTCCAGTAcctcaatttttcaaaagataagAGCCTTTGAGGAAGAACTCAAGGCCATTTTACCTAAAGAGGTGGAAAGTGCTAGGATTGACGTTGAGAATGGAAATCCCACTATTCCTAACCGAATAAAGGAATGCAGGTCTTACCCATTATATAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTAACAGGTGAGAAAGTTAGGTCACCTGGTGAGGAATGTGATAAGGTATTTATTGCATTGTGTGAAGGGAAGTTTATTGATCCTATGTTGGATTGTTTCAAGGGGTGGAATGGTGATCCTTTACCAATATGCTAA	2154	0.4359	MEYSKENHSYGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEEYRKPVVMLGGKSLTVSQVAAVAAHHNGGVTVELAEETRHGVKASSDWVIDSMVKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSTTRAAMLVRINTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKTTVSQVAKRALTVGINGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMQRLRSVLVDHALQNGDKEANSSTSIFQKIRAFEEELKAILPKEVESARIDVENGNPTIPNRIKECRSYPLYKFVRENLGTTLLTGEKVRSPGEECDKVFIALCEGKFIDPMLDCFKGWNGDPLPIC	717

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g1081	717	TIGRFAM	phe_am_lyase: phenylalanine ammonia-lyase	25	707	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Ssu7g1081	717	Pfam	Aromatic amino acid lyase	63	538	IPR001106	-
	Ssu7g1081	717	PANTHER	HISTIDINE AMMONIA-LYASE	17	717	IPR001106	-
	Ssu7g1081	717	SUPERFAMILY	L-aspartase-like	25	717	IPR008948	GO:0003824
	Ssu7g1081	717	PANTHER	PHENYLALANINE AMMONIA-LYASE 1-LIKE	17	717	-	-
	Ssu7g1081	717	Gene3D	-	17	263	IPR024083	-
	Ssu7g1081	717	CDD	PAL-HAL	61	527	IPR001106	-
	Ssu7g1081	717	Gene3D	Fumarase/aspartase (Central domain)	264	711	-	-
	Ssu7g1081	717	Gene3D	-	530	651	IPR023144	-
	Ssu7g1081	717	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	199	215	IPR022313	GO:0016841

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g1081	Ssu-Chr7	23813302	23819179	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g1081	25	717	Monolignol Biosynthesis Gene Families	AT3G53260	82.684	0.0	1218

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g1081	K10775		-	gmx:100801470	1350.11

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