Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1080 ATGGGAATGGAAATCACAATTAGATCAAGAGAAACAATCAAACCATCGTTGCCCACGCCAGATGACCACAGATTCTTCCAACTTTCTTTGTTTGATCAGCTTCAACTTATCACCTATTTGCCAATGGTTTTGTTTTACCCCAAGAAGGAAGGCCTCTCGGAACCATCTCACATATGTGCTCAATTGAAACGATCATTGTCTGAGACACTAACCATTTTCTACCCTGTGGCAGGCAGAAGAAAGGACCACACCTTTATCACTTGCAATGATGAGGGTGCTCTTTACTTGGAAGCCAAGGTGAACCATAACATGGTTGAGTTCCTCACACCACCTAAGCTAGAATTTCTAAACAAATTGCTCCATGTGAGCCTAATAAGATGCACTCAAATAGAGAAACCTTACCCCAAGTACTTGTACAACCTCTTCCAAACTACTTGGGCTGCTATATGCCGTGGCTCTAGGGAGGAAGTGCAATGTCCTGATTTCAATTCTGCTTCTTCTTTCCTTCCACCAGTGGATCATTTGAGTTTGCATGACCATGTTGATCAAAATAATGAGGATTCAAGTGCACAAAAAATGTGCACCACTAGAAGATTTGTGTTTATTGCTGAATCCATCAACACTTTAAGAGCTGAAGCAAAAGATGATGACGATGATGAAAGCTCAAAGCCTCCTACACGATATGAAACACTGGCTGCTTTCATTTGGAAACACATGACACTTGCATGCAAGAAGGAGTCTAGGGATAGCACAAGGCCCGCACTGGCCATCCATATTGTGAACATGAGGAGGAGGATGGGTGAACCTATCTCTAAATACACCATAGGTAACATTTTGTGGCCTGTAATGGTATTTTGTGAAACAGTCAATGCAGACACTGGTGTTAGATATTTGGTAAGCATTGCCAGAGAGAAATTTGGAAAGCTTTCAAGGGAATTGCTTCTAAGAGTGAAAAGTGATCCCAATATCCTAGGGAGCACTCAATGTGTGGATCTGCCTCAAGGTATAGAAACAAGAAGTCCAATTCCAGTTGTGTTGACAAGTTGGTGTGGTTTGAATTTCAGTGAGCTAGATTTTGGTTGGGGGAAGCCTTTGTGGATTGGTGTTAGAGGAGGAGATCAGGAAACTCTCCCCAATGTAGCTGTTATCATGGAAACAGATGCAGGCATGGAAGCTTGGTTGACAATGGAAATGCAACATATAGCTAACTTGGAAAAAGACATGGAGTTTCTCAGATTAGCTTTGCCTAATCCTAGTGTTTCAAACATATAG 1272 0.419 MGMEITIRSRETIKPSLPTPDDHRFFQLSLFDQLQLITYLPMVLFYPKKEGLSEPSHICAQLKRSLSETLTIFYPVAGRRKDHTFITCNDEGALYLEAKVNHNMVEFLTPPKLEFLNKLLHVSLIRCTQIEKPYPKYLYNLFQTTWAAICRGSREEVQCPDFNSASSFLPPVDHLSLHDHVDQNNEDSSAQKMCTTRRFVFIAESINTLRAEAKDDDDDESSKPPTRYETLAAFIWKHMTLACKKESRDSTRPALAIHIVNMRRRMGEPISKYTIGNILWPVMVFCETVNADTGVRYLVSIAREKFGKLSRELLLRVKSDPNILGSTQCVDLPQGIETRSPIPVVLTSWCGLNFSELDFGWGKPLWIGVRGGDQETLPNVAVIMETDAGMEAWLTMEMQHIANLEKDMEFLRLALPNPSVSNI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1080 423 Gene3D - 192 413 IPR023213 -
Ssu7g1080 423 PANTHER F21J9.9 140 418 - -
Ssu7g1080 423 Gene3D - 1 135 IPR023213 -
Ssu7g1080 423 Pfam Transferase family 142 410 - -
Ssu7g1080 423 Pfam Transferase family 3 122 - -
Ssu7g1080 423 PANTHER F21J9.9 7 122 - -
Ssu7g1080 423 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 122 - -
Ssu7g1080 423 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 140 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1080 Ssu-Chr7 23784411 23785759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1080 3 406 Monolignol Biosynthesis Gene Families AT5G48930 23.736 1.22e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1080 - K13065 gmx:102668997 684.485