Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1078 ATGGGAAGCAAGTGGAAGAAAGCCAAGATGGCGCTCGGTCTCAATCTCTGCATGTTCGTCCCCAGAACGTTAGACGACGACTCGCCGCCGCACACCGTGGTTTCCGAGCGATTGTCCGACGCCGCACTGCTCTCGCCGGCAAACTGGGACACCGGCTCTTCCCGGCCAACCACGCCGGTGCCGTCTTTTCATGGTTTGAAGCTCTCCAAAAGTACCAGCAAATCGTCCAAGCAAACCTGCTCAATTTGCTTAACCAAAATGAAGCAAGGATCCGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGTCCCAGTTTGGATCCTATCCCCGGCAGAGTTTCACCAAGTCCAATCAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTCTACCTCTACCTCATCCTCACCGAGATTTGAATAGGAGGCATGTTGTGCCACTTTATCAGGCTTCTGAGCCTGGCATATTTGACGATGATGAATCCTTAAATCATCAACATGCATTTTCTGAGAGAAGCCCTTGCAATAGGAATACTGAAGATACTGATGCTGCCAGAGCAATGGAGATTAAAACGTTCCCAGAAGTATCCGCTGCTCCAGGATCCAAGACTTTTTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCTGCAGCAGCAGCCAAAAGACAGAACCTTAGTAGAAACCAGGCTAACTTGGCACAGATGTCTCAGACTCCTCGTGCCCCTGTCGACTTGGTCACAGTGCTTGATGTCAGTGGTAGCATGGCTGGAACAAAGCTTGCACTACTAAAAAGAGCTATGGGATTTGTCATACAGAACCTAGGCTCTAACGACCGGCTATCTGTTATTGCCTTTTCTTCCACGGCTCGCCGCCTCTTTCCCCTGTGCAGAATGACCGATTCTGGGCGGCAGCAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATCGCCGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATACTGTTGTCCGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAGCTAACCAGCCTCAACCAAATTATCAGTTTCTTCTGCCCACTTCCATCAGTGGTTGTGATAACTCAGGATTTCAAATTCCCGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCCCTAATGCACTCAATTTCAGAGATTTCTGGGGGCACATTTTCTTTCATAGAGACTGAAGCTGTGTTACAGGATGCGTTTGCACAGTGCATTGGAGGACTTCTGAGTGTTGTTGTTCAGGAGCTGCAAGTGGGAATTGAGTGTATACACCCGAATCTCAGTCTTGTTTCGCTCAAAGCAGGAAGTTACCCTAGCCGTTTGATGGCTGATGTACGCAAAGGATTGATCGATGTTGGAGACCTGTATGCTGATGAGGAGAGGGATTTTCTAGTTTCAGTTAATGTCCCTGCTACATCTGGCAATGAAACATCATTGATAAAGGTCAAATGTGTGTACAGGGATCCCTTAACTCAGGAAACAGCAACACTGGAAAGTGAGGAAGTTAAGATTGAGCGGACTGAAACTGCCGGGCAGGTTGTAATGTCACTTGAGGTGGACAGACAGCGCAACAGGCTCCAAGCAGCTGAGGCAATGGCGCAGGCACGGGTTGCAGCTGAACAGGGAGACCTAACTGGAGCAGTGTTTATCCTTGAAAACTGTAGAAAGATGCTTTCAGAGACCGTTTCGGCCAAATCTCACGACCGCCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCGAGTAGGCATGTGTATGAAGCATCTGGGAGAGCGTATATACTTTCTGGATTGAGTTCACACTCGTGGCAAAGAGCAACAGCAAGAGGTGATTCCACTGATAGGTCTAGTCTTGTTCAGGCATATCAGACACCGTCGATGGCCGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGGCAGAGGCTTCTCCAGCCACTGTTGTCATTCAGATCACAACCGAGCCCGAGGTGA 2184 0.4808 MGSKWKKAKMALGLNLCMFVPRTLDDDSPPHTVVSERLSDAALLSPANWDTGSSRPTTPVPSFHGLKLSKSTSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQHAFSERSPCNRNTEDTDAARAMEIKTFPEVSAAPGSKTFSNFTVLVHLKATAAAAAAKRQNLSRNQANLAQMSQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGANQPQPNYQFLLPTSISGCDNSGFQIPVHAFGFGADHDASLMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIHPNLSLVSLKAGSYPSRLMADVRKGLIDVGDLYADEERDFLVSVNVPATSGNETSLIKVKCVYRDPLTQETATLESEEVKIERTETAGQVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLTGAVFILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQAMLLGSPSGQRLLQPLLSFRSQPSPR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1078 727 Pfam von Willebrand factor type A domain 280 463 IPR002035 -
Ssu7g1078 727 SMART ring_2 80 123 IPR001841 -
Ssu7g1078 727 SMART VWA_4 278 465 IPR002035 -
Ssu7g1078 727 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 705 - -
Ssu7g1078 727 ProSiteProfiles VWFA domain profile. 280 466 IPR002035 -
Ssu7g1078 727 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Ssu7g1078 727 Coils Coil 625 645 - -
Ssu7g1078 727 MobiDBLite consensus disorder prediction 46 69 - -
Ssu7g1078 727 PANTHER OS10G0464500 PROTEIN 3 705 - -
Ssu7g1078 727 Pfam Ring finger domain 79 124 IPR001841 -
Ssu7g1078 727 CDD RING-H2 80 124 - -
Ssu7g1078 727 Gene3D von Willebrand factor, type A domain 280 467 IPR036465 -
Ssu7g1078 727 SUPERFAMILY vWA-like 275 466 IPR036465 -
Ssu7g1078 727 Pfam VWA / Hh protein intein-like 629 701 IPR032838 -
Ssu7g1078 727 SUPERFAMILY RING/U-box 76 130 - -
Ssu7g1078 727 CDD vWA_C3HC4_type 279 453 - -
Ssu7g1078 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1078 Ssu-Chr7 23730361 23734301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1078 55 131 C3H Transcription Factor Family AT2G04240 32.468 8.50e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1078 - - gmx:100813569 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1078 7 23730361 23734301 Ssu7g1078 7 23730361 23734301 ECH