Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1073 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGACTTTCCAGTCGAGGACGTTGACGGCGGCGCCGCCACCTTGCCGTCGGTCGCCCCCGCCGGCGGGAGCTGCAACTCGCTGGCGAGCATCTGGCCCGGCGAGTCCGAGTCATTTCCCGCCTCCGACTCGGTGTTTTCCGGCAACAGCGCCTCTGACCTGTCGGCCGAGCTCTCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCCAACTTTGTGGAGGACTCCTTCTGTGGGGGGAGCCTGACCATAGTGGAGGAGCCATCATGCACCACCAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCTTGCTCTGGCGGGAAGACTGTGCCGCGCAGCCCGGAGATTTACATCCCCGTGCCATGTGGACGTGCACGCAGCAAGCGCCCACGCCCTGCAACCTTCAATCCTAGGCCTGCCATGAACCTCATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATCTCCTCCAAGGCCTCTTCGGATTCTGAGAATTTTGCTGAGTCTCAACCTGTCCCCAAGATGCCAAAGCAAGCTCCTGGGGAGcctaagaagaaaaagaaagtgaaggtGCCACTTCCAGTAGGTCCAGCTGATAGCAATCAGAATGCTTCACAACCGGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAATACCGGCCTGCTGCAAGTCCAACTTTTTGTCCATCTGTGCACTCGAATTCCCATAAGAAGGTCCTGGAAATGAGGTGCAGGGGCATTGACAAATCTGGTTTTGCAATCAATTCAGCTGCTTCACCTGAACTCATTCCAAACACCAACAGCAGCCTTCCCCTGGAGTACATGTGA 1041 0.5408 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVAPAGGSCNSLASIWPGESESFPASDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTIVEEPSCTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPRSPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQPVPKMPKQAPGEPKKKKKVKVPLPVGPADSNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAINSAASPELIPNTNSSLPLEYM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1073 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 309 - -
Ssu7g1073 346 MobiDBLite consensus disorder prediction 196 246 - -
Ssu7g1073 346 Gene3D - 247 296 IPR013088 GO:0006355|GO:0008270
Ssu7g1073 346 PANTHER GATA TRANSCRIPTION FACTOR 8 1 346 - -
Ssu7g1073 346 Pfam GATA zinc finger 252 285 IPR000679 GO:0006355|GO:0043565
Ssu7g1073 346 PANTHER GATA TRANSCRIPTION FACTOR 1 346 - -
Ssu7g1073 346 PIRSF Txn_fac_GATA_plant 3 339 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu7g1073 346 SMART GATA_3 246 296 IPR000679 GO:0006355|GO:0043565
Ssu7g1073 346 CDD ZnF_GATA 251 308 IPR000679 GO:0006355|GO:0043565
Ssu7g1073 346 ProSiteProfiles GATA-type zinc finger domain profile. 246 282 IPR000679 GO:0006355|GO:0043565
Ssu7g1073 346 ProSitePatterns GATA-type zinc finger domain. 252 277 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1073 Ssu-Chr7 23641315 23643299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1073 19 314 C2C2-Gata Transcription Factor Family AT4G32890 37.662 3.78e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu7g1073 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1073 - - gmx:100815693 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1073 7 23641315 23643299 Ssu7g1073 7 23641315 23643299 ECH
Ssu7g1073 7 23641315 23643299 Ssu7g1073 7 23641315 23643299 PCT