Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1072 ATGGATAGCATCGAGAGGGGCTCAGAAAGGTGCTTAGATTCTCAACTGTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCGGAACACGCTCATGGGAAGGTAGATTTTGGCCAAACCCGCATTCCGCCACTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACGGATGAGGTGTATGTGAAAATGAGGCTGACCCCTTTGAGGGAACATGAGTTGGATTTGGAGGGTGATTGTTTCTTGGGGAACACCGGAGTGGAGGGTCAAGAGAAGCCTCCAACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGCTTTTCTGTGCCTCGTTACTGTGCTGAAACCATCTTCCCAAGGTTGGACTATTCAGCTGAGCCCCCAGTTCAGACCATCATTGCCAAGGATGTGCATGGACAGTGCTGGAAGTTTAGGCACATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAGTTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGGTGGAACCCTCTCTTTGGTGGGGGTTCTGGTTTCCTGTGTGGGAGTGAGAGCAATTTGGTGAGTGGTGCaaaaggtggtggtggtgttggtgATGAGATGGTGGGAAGAGTGGCTGCTGAATCTGTTGTCGAGGCTGTGACTTGTGCTGTTAATTGTAGGCCTTTTGAGGTTGTGTACTACCCAAGGGCTAGTTCCCCAGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCTTCTAGGATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATCCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTATGGGATGAGCCAGATTTGCTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAAACATGCCCACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCCTACAGGACCCTTATTTTCAAGTCATCAACCAACTCCCAGTGCCATCATTCTCTAGCAATCTTATCAACTATACCAACTCTCTATGTACCATTCAAGGTAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAGTTTGGACTATCTCCATCTGATTTTCCCTTTAACAAGCTCCCAGCAGACATGCTTCTAGGCGGGTTCTCAAGGCTTGACCATGCAGCACAACCTGTTAAGCCTCCTTGTGGATCCTATAAGAGCAACGCTACTAATAAGGCCGATGTTGATATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAAAAGAGTTCAAACACTAGCTCTGCCAGTACAACTGGGAATAGTGTTTCTGAGGGGAATTCACTCAAGACATCAAATGCTTCTGATGGCCTAGGTTCTGCTTTGCACCAAAGTAGCCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTCGGAACCGAAAACGTTAACACATTATGCATAGCTTTATAA 1812 0.4669 MDSIERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRIPPLIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELDLEGDCFLGNTGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSSFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNPLFGGGSGFLCGSESNLVSGAKGGGGVGDEMVGRVAAESVVEAVTCAVNCRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPVPSFSSNLINYTNSLCTIQGNSSAGIQGARHAQFGLSPSDFPFNKLPADMLLGGFSRLDHAAQPVKPPCGSYKSNATNKADVDISCLLTVGNPGQNFKESNETKAPHILLFGKLIHTEQKSSNTSSASTTGNSVSEGNSLKTSNASDGLGSALHQSSPIENNSDGGSPWYKDQHKSDLGTENVNTLCIAL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1072 603 Gene3D - 312 385 - -
Ssu7g1072 603 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Ssu7g1072 603 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 573 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu7g1072 603 PANTHER AUXIN RESPONSE FACTOR 16 6 573 - -
Ssu7g1072 603 MobiDBLite consensus disorder prediction 534 582 - -
Ssu7g1072 603 CDD B3_DNA 114 215 IPR003340 GO:0003677
Ssu7g1072 603 Pfam Auxin response factor 276 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu7g1072 603 Gene3D - 113 217 IPR015300 -
Ssu7g1072 603 SUPERFAMILY DNA-binding pseudobarrel domain 106 216 IPR015300 -
Ssu7g1072 603 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Ssu7g1072 603 MobiDBLite consensus disorder prediction 534 589 - -
Ssu7g1072 603 SMART B3_2 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1072 Ssu-Chr7 23600361 23602896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1072 1 589 B3 DNA Binding Superfamily AT4G30080 56.333 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu7g1072 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1072 - - gmx:100803053 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2412 7 47054832 47057363 Ssu7g1072 7 23600361 23602896 ECH
Ssu4g1020 4 16385958 16388681 Ssu7g1072 7 23600361 23602896 ECH
Ssu7g1072 7 23600361 23602896 Ssu7g1072 7 23600361 23602896 ECH