Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1052 ATGATGGGTTATTCTTCCAGATTCTGTCTTGTTTTGCTTTTGTCCATTTGTGGGGTGGTTTCTTTGGCTTCTCCCGTTGAAGATcaaaagagagatagaattACTCAGCTGCCAGGGCAGCCAAAGAATGTGGGGTTTGCTCAGTATTCTGGCTATGTGACTGTGAATGAGCAAAGTGGGAGGGCACTGTTTTACTGGTTGGTTGAGGCACCAGTGAGGCGTGGACCAAGGTCAAGGCCACTAGTGTTGTGGCTTAATGGTGGCCCTGGATGTTCCTCTATTGCTTATGGTGCATCCGAGGAAATTGGTCCTTTTCACATTAGGCCTGGTGGCAAGTCACTTTACTTGAACCCTTACGCTTGGAATAATTTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCATATACCAATAAAACAACCGATCTATATACATTTGGTGACCAGAGAACAGCtgaagatgcatatacttttcttGTTAATTGGTTTGAAAGGTTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACCAGAAAAATAAGGGAATCAAGAATCCGGTTATAAATTTTAAGGGATTTATGGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGTACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACATATAGGATGCTAAAAATTGCCTGCGACTTTGAGTCCTCCCTGCATCCATCAGTGCAATGCATGCAGGCTCTCAAAGTTGCAGTTGTGGAGCAGGGAAACATTGATCCATATAGCGTTTATACACAGCCTTGTAACAATACAGCATCACTCAGACGTGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGAGATTCCTTATGCATGGAAGACATGCAGTGATATTGTCGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAGCTTATTAATGCTGGCCTCCGAATATGGGTATACAGTGGAGACACAGATGCTGTGGTTCCAGTGACTGCTACTCGATATTCTATTGATGCCTTGAAGCTACCTACCCTCATCAACTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGCTTGACATTGGTTACAGTAAGAGGAGCTGGACATGAGGTTCCTCTTCATAGGCCCCGCCAagcatttattctttttaggtCATTCTTGGAGAACAAGTCCATGCCATCGCCAAGTTAG 1383 0.415 MMGYSSRFCLVLLLSICGVVSLASPVEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVRRGPRSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPGGKSLYLNPYAWNNLANILFLDSPAGVGFSYTNKTTDLYTFGDQRTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQIVYQKNKGIKNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLKIACDFESSLHPSVQCMQALKVAVVEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKALHANVTEIPYAWKTCSDIVGNYWTDSPLSMLPIYQELINAGLRIWVYSGDTDAVVPVTATRYSIDALKLPTLINWYPWYDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKSMPSPS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1052 460 Gene3D - 312 348 - -
Ssu7g1052 460 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Ssu7g1052 460 Gene3D - 359 452 - -
Ssu7g1052 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Ssu7g1052 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Ssu7g1052 460 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
Ssu7g1052 460 PANTHER CARBOXYPEPTIDASE 19 457 - -
Ssu7g1052 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Ssu7g1052 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Ssu7g1052 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Ssu7g1052 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Ssu7g1052 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Ssu7g1052 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 457 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1052 Ssu-Chr7 23064773 23069601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1052 322 456 Calmodulin-binding Proteins AT2G22960 28.676 1.62e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1052 K16297 - gmx:100812000 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1052 7 23064773 23069601 Ssu7g1052 7 23064773 23069601 ECH