Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1044 ATGGGGAGGAAAGGGACTTGGTTTTCTGCGGTGAAGAAAGTTTTCATTTCTGATTCCAAAAAGGATCAGaaacatcatcatcatcataagtCAAAGTTCGCATGTTTTGGGGTTCATCATCCCGAGGATCTAGAAAGGGCAGATGGAGGAGCACCAATTGCTGTTGTTCCCTCACTTCCACCTAGAAAAGAAACCAAACCAAGAAGTGAGGCAGAGAATGAACAGAGCAAGCAAGCCTTTTCTTTGGTTCTGGCCACTGCCGTGGCTGCGGGGGCTGCTGTTGCTGCTGCTGCAGAGGTTGCTCGACTCACAAACACGCCACGTTCCAGTGGAAGAAAGAATCAGGAAGTAGCAGCCATCAGAATTCAAACGGCGTACCGTGGATATTTGGCAAGGAGATCCTTGCGTGGCTTGAGAGGTTTGGCGAGGTTGAGGACATTGGTACAAGGGCAATCTGTTCAGCGGCAAGCGGCTACTTCCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCACGGAAGACGAGAATGTGTGAGGAGAACCAGGCTCTTCAACGGCAACTGCAGCAGAAACGTGAAAAGGAGTTTGACAAGTTGCAAGCTACTCAGGTTGGAGAAAAATGGGATGATAGCTCGAAATCAAAGGAGCAAATTGAAGCAAAATTGTTGAACAGACAAGTAGCAGCTATGAGAAGAGAGAGGGCTTTGGCCTATGCATCAACACAGCAGCAAGCGTGGAAGAACTCTTCAAAATCTGCTGCAAATGCCACATTTATGGATCCAATCAATCCCCACTGGGGCTGGAATTGGGTAGAGAGATGGATGGCTGCAAGGCCATGGGAGGGCCAAAACACTACGTACCACAGCAATGGCCATGCATCTGCCAAGATTGCCGCAAGCCCCACCATGTCAGTTGgtgaaatcacaaaattgtattCTCTCCGTGATcagaaccatgatgtcaaaagcTCCCCAGCAAGCCAAAAACCAATTAGCCGTCCTCCCAGCCAAATTAATTCCCCTTCAACAACGGCTCCAAAGGCCCCATCTGCCAATGGAACAAAGGCAAAGGTACCATCAAGTCCAAAGGGTGGCTCATGGGGTGGTGATGGTGACTCAAGAAACATGTTTAGCAAAAACTCAGAAAACAATCGCAGGCACAGCATTGGAGTATCTCCAGTGAGAGATGATAAGAGCAATGCAAGCTCATCACCTGCTTTTCCAAGTCACACAACACCATCCACAAAGGTTGCAAAGGCCAGGTTATCATCCAAAGTGCGACGTGCATCATTTGGTGTACACAGAAATGGAACACCGGAAAAAGTTGTTCCTCTAAAGAAGAGGCTTTCTTTCCCAGCTTCTCCAGCCGGTTCAAGAAGGCATTCTGTTCCAACTAGGCCGGGAAATGTAGCTTCCAATAAGAGTGTTGCTACTGCTACCATCCCTGAGGAGAAAGTGAGAGTGAAAAACGGAGGGAGCAGGTAG 1497 0.4676 MGRKGTWFSAVKKVFISDSKKDQKHHHHHKSKFACFGVHHPEDLERADGGAPIAVVPSLPPRKETKPRSEAENEQSKQAFSLVLATAVAAGAAVAAAAEVARLTNTPRSSGRKNQEVAAIRIQTAYRGYLARRSLRGLRGLARLRTLVQGQSVQRQAATSLQCMQTLSRLQSQVRARKTRMCEENQALQRQLQQKREKEFDKLQATQVGEKWDDSSKSKEQIEAKLLNRQVAAMRRERALAYASTQQQAWKNSSKSAANATFMDPINPHWGWNWVERWMAARPWEGQNTTYHSNGHASAKIAASPTMSVGEITKLYSLRDQNHDVKSSPASQKPISRPPSQINSPSTTAPKAPSANGTKAKVPSSPKGGSWGGDGDSRNMFSKNSENNRRHSIGVSPVRDDKSNASSSPAFPSHTTPSTKVAKARLSSKVRRASFGVHRNGTPEKVVPLKKRLSFPASPAGSRRHSVPTRPGNVASNKSVATATIPEEKVRVKNGGSR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1044 498 MobiDBLite consensus disorder prediction 322 363 - -
Ssu7g1044 498 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Ssu7g1044 498 MobiDBLite consensus disorder prediction 399 423 - -
Ssu7g1044 498 Coils Coil 178 198 - -
Ssu7g1044 498 MobiDBLite consensus disorder prediction 320 498 - -
Ssu7g1044 498 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Ssu7g1044 498 MobiDBLite consensus disorder prediction 469 483 - -
Ssu7g1044 498 MobiDBLite consensus disorder prediction 51 75 - -
Ssu7g1044 498 SMART iq_5 114 136 IPR000048 GO:0005515
Ssu7g1044 498 Gene3D iswi atpase 111 139 - -
Ssu7g1044 498 MobiDBLite consensus disorder prediction 377 392 - -
Ssu7g1044 498 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 490 - -
Ssu7g1044 498 Coils Coil 217 237 - -
Ssu7g1044 498 PANTHER IQ-DOMAIN 5-RELATED 1 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1044 Ssu-Chr7 22858676 22861481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1044 1 468 IQD Protein Family AT5G03040 42.292 9.66e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1044 - - gmx:100807725 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1044 7 22858676 22861481 Ssu7g1044 7 22858676 22861481 ECH