Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1040 ATGACGAAGTCACCCACCCTGTCCCAACATGCTTCCCCTTTGGTCTATATATATAGCCAGACTCGCCTATCCAATGCAAGAAACCCAAAAAATATCATAGTGAATATTAATCCTATTGGCTCTGTTTTCCTCTGTCTCTCACAAGACACAATGGAGTACAAAGTGAAGACCACAACACCTTCTCCACCAATCCCAATCCATGTTCCCACTATGCTCTCAAACTCTTCTCCATCTTCGTCTTCTTCACCTCCTTTACAATCTCCCACACCTTTCCCTTCACCCTCTCAGGGCTCTCCCTCTGTTGCTCCACCATCTCCTCCGCCACCGCCGCCGCCGGTGGTGGTTAGCCCTTGTGCTGCTTGCAAGATCCTCCGCCGCAGGTGCGTGGAGAAGTGTGTGTTGGCTCCCTATTTCCCTCCCACTGATCCTCTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCGGTTTATGGTTGTGCAGGTGCAATATGCCAACTTCAAAAGCAAGTTAGTGAGCTACAAGCACAGCTGGCCAAAGCACAAGCTGAGCTAGTCAACATGCAGTGCCAACAAGCTAATTTAGTGGCGCTAATTTGCATGGAAATGAGTCAATCACAGGAGCAGCACATGCTTCAGCCTCAACCTCACGTTGATATGAGCTGCTTCATAGAGGACAACAGTTTTGGGACTGCTTGGGAGCCTCTTTGGACATGA 813 0.4895 MTKSPTLSQHASPLVYIYSQTRLSNARNPKNIIVNINPIGSVFLCLSQDTMEYKVKTTTPSPPIPIHVPTMLSNSSPSSSSSPPLQSPTPFPSPSQGSPSVAPPSPPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQEQHMLQPQPHVDMSCFIEDNSFGTAWEPLWT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1040 270 MobiDBLite consensus disorder prediction 56 109 - -
Ssu7g1040 270 ProSiteProfiles LOB domain profile. 116 217 IPR004883 -
Ssu7g1040 270 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 104 258 - -
Ssu7g1040 270 Pfam Lateral organ boundaries (LOB) domain 117 214 IPR004883 -
Ssu7g1040 270 MobiDBLite consensus disorder prediction 83 109 - -
Ssu7g1040 270 MobiDBLite consensus disorder prediction 68 82 - -
Ssu7g1040 270 Coils Coil 196 223 - -
Ssu7g1040 270 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 104 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1040 Ssu-Chr7 22814651 22816232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1040 113 270 AS2 family AT1G07900 72.393 1.39e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g1040 LOB 4.3e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1040 7 22814651 22816232 Ssu7g1040 7 22814651 22816232 ECH