Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1028 ATGTCTGGCAACTCGAATTGCAGCGTTTACATAGGCAATCTGGATGAGAGGGTTACAGATAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAAAAACCAAAAGGTTTTGCATTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTCATAACACTCTACAACAGAACACTCAAGTTTGCGATATCTGGGAGAGACAAAACTAGCCCTAATGGTTCTACAGCAATTACCCCCACATCAAATTCTTCTCAAAGACCAAGGGCTTATCCAGTGCCACTAAAtaattcagaaaattttcagcaCCATGCTAGGCTATCAACTCATGACCGATTTTCAGATTATGCAGTAAATTATTCCCAAGTTCCTCCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAATGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGTTCTAGGTCACGCCGCTTTGATAGAAGTAGCCCAGTCTCTTACCCATCTTACTAA 588 0.4082 MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLITLYNRTLKFAISGRDKTSPNGSTAITPTSNSSQRPRAYPVPLNNSENFQHHARLSTHDRFSDYAVNYSQVPPRVTDQSSGYGSHYNGNNYEYSRRAFGATLDSISRSRSRRFDRSSPVSYPSY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1028 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 195 - -
Ssu7g1028 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Ssu7g1028 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Ssu7g1028 195 MobiDBLite consensus disorder prediction 88 110 - -
Ssu7g1028 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
Ssu7g1028 195 Gene3D - 2 95 IPR012677 -
Ssu7g1028 195 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
Ssu7g1028 195 PANTHER OS01G0876500 PROTEIN 1 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1028 6 154 Eukaryotic Initiation Factors Gene Family AT4G34110 27.333 1.66e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1028 K12831 - gmx:100803118 348.206