Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1022 atGAAAGATTCAGATCTAGAGGAAGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCTGAtagggaaaggaaaaagaagggaaagaTAGTTAGGGAACATAACGTTTCTATGAGTAGTACTACTATGATGAACTCCTATGAAAGCTATGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTTGTAGAAGATGGGAATGGCCTCTCTTTGATCCATTTGCTGCTCTCAACTGCCACTGCAGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTATACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAACGTGTGGTGGCCTATTTTGCTGATGGTTTGGCAGCAAGGCTTCTCACAAGGAAATCCCCATTCTACGACATGCTCATGGAGGAACCAACAAGTGAGGAAGAGTTCCTTGCATTCACAGATCTCTACAGGGTTTCACCTTACTACCAATTTGCTCATTTCACAGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGGGAGGAACAACCGTGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTTTCAGAGAAGGCAACCAGCGGCAACCGCATATCCCTCAGGATAACTGGATTTGGGAAGAACCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGGCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGGTCAAGGGTCATCAACctaaggaagaaaaagaatgaaacggTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTTGTGCTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTTTTGTCAAGGTTCACGGACTCTTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGCCTCCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTGTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGTGGATAGCCCAAAGTATGAGAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGCTGCTGAAGATGAGGACCCATTATTGTCCACTCCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACCGTCTCAGCATGGCAATCAGTGTGA 1392 0.4296 MKDSDLEEDELLNLSLSVAADRERKKKGKIVREHNVSMSSTTMMNSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLSLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEKEEGRNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGVDSPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1022 463 ProSiteProfiles GRAS family profile. 74 461 IPR005202 -
Ssu7g1022 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 461 IPR005202 -
Ssu7g1022 463 Pfam GRAS domain family 83 461 IPR005202 -
Ssu7g1022 463 Coils Coil 353 373 - -
Ssu7g1022 463 PANTHER OSJNBA0084A10.13 PROTEIN 10 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1022 Ssu-Chr7 22308273 22309664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1022 57 460 GRAS Transcription Factor Family AT3G54220 35.109 1.01e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu7g1022 GRAS 1.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1022 - - gmx:100813979 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1022 7 22308273 22309664 Ssu7g1022 7 22308273 22309664 PCT