Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1019 ATGAGATattattgcttatataagcatTCACTTCAGCTCCCATGTTCTCTTCCTCatcacaaattttttcttttcctcagaAGTGGAGCATTCAGGTTGTTAGAGTGTCCATTGAGATTTGAATCTGTGACTATACCTTTGATTGTCAGGGATTTTGATTTCTCAGAGTTTAAAATGGATCCAAAAGGAAGCTTATGTGCTAACAACTGCACAAGGTCCTCTTCCTTAACCTCTCCTCGGAATGGATTACAAACAAATTTGTCCTCAGATCCTCCCTCTTTCTATGGGGTCAGGATTGAATCACCTTTCAAAGAATTCAACCCACCCTCTCCTCCAACCCAGTCTGTACTTCCAGGTGAATCTAACAAAGATATTGTGATCCCTGATCAAGAAAATTATCCACTGAGTGACTCATCACATACCAGTAAACTCCAAGACTGGAATCCAAATGTGATGTTGAATAACCTTTCTTTCCTCGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCTCTTGGACAACCTCATGAACTAGTGACTCAGGAACAGCAGCTCATCACAACCGATCTTACATCAATTATTGTTCAATTGATCTCCACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACACAAATCCCTTGGTTGGCCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGTATTAGGCCACAAAATGTTAGTGGAAATAAACTGTTTGATCAGTCCACTCAGAATGATCTACCAAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAGCATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCCGGTTCCTACGAGATTTTACagttagaaaaagaagaaatcctCGCGCCTCACACACATTTCTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCGAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACACTAAAGGAATAGCTGAGCCACTTGATTTCCAGAACAGAGAAAGCAACAATAAGGTAGGAAGTTTGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGTAGTTGAAAACATGATGGATGTGAAAGGTAATATTGATGATCCTATGAATTATTTGTCATCGTTGAACTTCGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCCCAACCTCCGTTTGAAGATTCAGAaggttctttctcttttctcatgTCAGGATCCTTTAATTATGCTCCTAAATTTGGTGGCGGTGAATCAAGTTCTGACAATCTGTAg 1704 0.3914 MRYYCLYKHSLQLPCSLPHHKFFLFLRSGAFRLLECPLRFESVTIPLIVRDFDFSEFKMDPKGSLCANNCTRSSSLTSPRNGLQTNLSSDPPSFYGVRIESPFKEFNPPSPPTQSVLPGESNKDIVIPDQENYPLSDSSHTSKLQDWNPNVMLNNLSFLEEKIHQLRDLVHLIVNKKCQPLGQPHELVTQEQQLITTDLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLHGINLPFGSEPSSGIRPQNVSGNKLFDQSTQNDLPNNCEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGIAEPLDFQNRESNNKVGSLNFCFGSNPSSENVVENMMDVKGNIDDPMNYLSSLNFEGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1019 567 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Ssu7g1019 567 SMART c2h2final6 315 337 IPR013087 -
Ssu7g1019 567 SMART c2h2final6 402 424 IPR013087 -
Ssu7g1019 567 SMART c2h2final6 364 397 IPR013087 -
Ssu7g1019 567 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 59 550 - -
Ssu7g1019 567 Gene3D Classic Zinc Finger 299 369 - -
Ssu7g1019 567 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 342 IPR013087 -
Ssu7g1019 567 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 59 550 IPR044300 GO:0010044|GO:0010447
Ssu7g1019 567 SUPERFAMILY beta-beta-alpha zinc fingers 313 340 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1019 Ssu-Chr7 22277383 22279938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1019 283 565 C2H2 Transcription Factor Family AT1G34370 69.550 1.84e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1019 - - gmx:100170687 964.14