Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1008 ATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGAGGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATTTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCCACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACAGGAAGGGACAAGGCTGTGATGACCAAAATAGAATCATAG 315 0.419 MESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMTKIES 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1008 104 Pfam No apical meristem (NAM) protein 6 98 IPR003441 GO:0003677|GO:0006355
Ssu7g1008 104 ProSiteProfiles NAC domain profile. 5 104 IPR003441 GO:0003677|GO:0006355
Ssu7g1008 104 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 100 - -
Ssu7g1008 104 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 4 100 - -
Ssu7g1008 104 SUPERFAMILY NAC domain 3 100 IPR036093 GO:0003677|GO:0006355
Ssu7g1008 104 Gene3D NAC domain 14 104 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1008 Ssu-Chr7 22148640 22149165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1008 1 101 NAC Transcription Factor Family AT1G71930 88.119 5.79e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g1008 NAM 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1008 - - gmx:100812904 209.149