Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1007 ATGAGGAAGACCTTGGTGTTCTACAAGGGACGTGCCCCAAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTTTGAACCATGGTGCAGTAGTAGTCAACAACACTTTTTCAGAGATCAAAGCTACGTAAGACCCTTATCAATTGCGGACATTTTGAATGACACAAGTGTGCCTCACCCTGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCAGCAACACTTAATTCTATCCAACCAAACTGTTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATGAAAGAATGTAACCCACAACACCATAATGGCCTAACAAATGAGGAATATTGCAGTGATGAAAGGAGCAATAACGGTGGACAAGGTATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCACAATTGAGTGAAACGGCTTATTTTTCACATCCAAACTTGCCCATGATCATGCCCCATAACCATGAGCTACAAGCTCAAAATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCATAG 648 0.4398 MRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFEPWCSSSQQHFFRDQSYVRPLSIADILNDTSVPHPAEGTSFSHPFSSDQQHLILSNQTVMDKQLIELPQLDSPTASLAMKECNPQHHNGLTNEEYCSDERSNNGGQGIDWKSLDNLFGSQLSETAYFSHPNLPMIMPHNHELQAQNQASHILGCFPDS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1007 215 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 1 192 - -
Ssu7g1007 215 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 192 - -
Ssu7g1007 215 ProSiteProfiles NAC domain profile. 1 48 IPR003441 GO:0003677|GO:0006355
Ssu7g1007 215 SUPERFAMILY NAC domain 1 48 IPR036093 GO:0003677|GO:0006355
Ssu7g1007 215 Gene3D NAC domain 1 52 IPR036093 GO:0003677|GO:0006355
Ssu7g1007 215 Pfam No apical meristem (NAM) protein 1 26 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1007 Ssu-Chr7 22146123 22148637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1007 1 215 NAC Transcription Factor Family AT1G71930 38.559 1.78e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1007 - - var:108325420 387.111