Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1004 atGCAGAAGCATGGTTTTGCATCAAAAAGCAAAGGTGTGTTACCGTATCAGACGCCGAGACTAAGGGACCACTACGTTCTGGGGAAGAAGCTGGGGCAAGGGCAATTCGGGACCACATACCTGTGCACGCACAAGGTGACAGGGAAGCTTTACGCGTGCAAATCGATCCCCAAGAGGAAGTTGTTGTGCCAGGAGGATTATGACGACGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCGGAGCATCCCAACGTTGTTCAGATACAGGGGACGTACGAGGATTCCGTGTTCGTGCACCTTGTGATGGAGCTGTGTGCCGGGGGAGAGCTTTTCGATAGGATAATTCAGAAGGGGCATTACAGCGAGAGAGAGGCTGCGAAGCTGATAAAGACGATTGTTGGGGTGGTGGAGGCGTGCCACTCTCTTGGGGTCGTGCATAGGGATCTCAAGCCTGAGAATTTTCTGTTTGATACCCCTGGTGAAGATGCCAAGATGAAGGCCACCGATTTTGGCCTCTCTGCCTTCTACAAGCCAGGACAAGCCTTTCATGATGTAGTGGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCAGAAGTAGACGTATGGAGTGCTGGTGTTATCCTATACATCTTACTGAGTGGGGTTCCACCTTTCTGGGCTGAATCCGAGTCAGGAATTTTCagacaaattttaaatggaGAGCTTGATTTTGTTTCTGATCCGTGGCCAAGTATCTCAGAAAGTGCTAAAGATTTGGTAAAACAGATGTTGGAAAGGGACCCTACGAAAAGAATTTCTGCTCATGAAGTTTTATGTCACCCTTGGATTGTTGATGATAAAGTTGCGCCCGACAAACCTCTGGACTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCAATGAATAAACTTAAGAAGATGGCATTACGTGTCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGATTAAAAgagttatttaaaatgattgacaCAGACAATAGTGGGACAATAACTTTTGAGGAACTCAAGGAGGGTTTGAAAAGTGTGGGCTCTAATCTCATGGAATCTGAAATCAAATCCCTTATGGAAGCGGCTGATATAGATAACAATGGAACAATAGACTATGGTGAATTTCTCGCTGCTACACTGCACTTGAATAAGATTGAAAGAGACGAGAATTTGGTTGCTGCTTTTGCCTATTTTGATAAGGATGGTAGTGGTTACATCACCATTGATGAGCTTCAGCAGGCTTGTAAAGACTTTGGCTTAGGTGATGTACATCTGGATGAGATGATCAAAGAGATTGATGAAGACAATGATGGGAGAATTGATTATGCGGAGTTTGCATCAATGATGAAAAAGGGTGATCCAGATGTTGGTAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGGAATGAAAGACTCTTCTTGA 1479 0.4402 MQKHGFASKSKGVLPYQTPRLRDHYVLGKKLGQGQFGTTYLCTHKVTGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVGVVEACHSLGVVHRDLKPENFLFDTPGEDAKMKATDFGLSAFYKPGQAFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAESESGIFRQILNGELDFVSDPWPSISESAKDLVKQMLERDPTKRISAHEVLCHPWIVDDKVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLKSVGSNLMESEIKSLMEAADIDNNGTIDYGEFLAATLHLNKIERDENLVAAFAYFDKDGSGYITIDELQQACKDFGLGDVHLDEMIKEIDEDNDGRIDYAEFASMMKKGDPDVGRSRTMKGNLNFNIADAFGMKDSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1004 492 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Ssu7g1004 492 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Ssu7g1004 492 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1004 492 CDD STKc_CAMK 24 282 - -
Ssu7g1004 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 475 - -
Ssu7g1004 492 SMART efh_1 330 358 IPR002048 GO:0005509
Ssu7g1004 492 SMART efh_1 436 464 IPR002048 GO:0005509
Ssu7g1004 492 SMART efh_1 402 430 IPR002048 GO:0005509
Ssu7g1004 492 SMART efh_1 366 394 IPR002048 GO:0005509
Ssu7g1004 492 ProSiteProfiles EF-hand calcium-binding domain profile. 436 467 IPR002048 GO:0005509
Ssu7g1004 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Ssu7g1004 492 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Ssu7g1004 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Ssu7g1004 492 ProSiteProfiles Protein kinase domain profile. 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1004 492 ProSitePatterns EF-hand calcium-binding domain. 339 351 IPR018247 -
Ssu7g1004 492 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Ssu7g1004 492 Pfam EF-hand domain pair 331 391 IPR002048 GO:0005509
Ssu7g1004 492 SUPERFAMILY Protein kinase-like (PK-like) 21 293 IPR011009 -
Ssu7g1004 492 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509
Ssu7g1004 492 SUPERFAMILY EF-hand 322 462 IPR011992 -
Ssu7g1004 492 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Ssu7g1004 492 CDD EFh 331 390 IPR002048 GO:0005509
Ssu7g1004 492 Gene3D Phosphorylase Kinase; domain 1 26 110 - -
Ssu7g1004 492 SMART serkin_6 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1004 492 Gene3D Transferase(Phosphotransferase) domain 1 111 294 - -
Ssu7g1004 492 PANTHER BNAA09G05220D PROTEIN 11 475 - -
Ssu7g1004 492 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Ssu7g1004 492 Gene3D - 295 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1004 Ssu-Chr7 22109496 22114057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1004 10 488 EF-hand Containing Proteins AT1G35670 83.090 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu7g1004 Pkinase 9.7e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1004 K13412 - gmx:547887 948.732