Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1001 ATGCCAACACCAACACCAACGGCAGCGTTTGGTGGTGTAGAAACTCCAAATGGAGACCCATCAACAACCCATGCACCTCCCAAACACAGCCTTCAAGAATCGCGTGGCCTCCCACTTTTTTTGTCTTGCTCTTACCCCATCACTCTTAAGTTCATGGACGTGGCCTACCGATTGAAGATTGAGGACAAACAAAGAAGCGGAGGGTGCATCAAGAGGTTGTTCACTCCGCACGAATCATCACCGTCTGATCAAAGATCAAGGGTGGGAGCGCCGCAGGAGCGAACTATTTTAAAAGGCGTGACGGGGATAGCGCACCCAGGGGAGATCTTAGCGGTGCTGGGTCCATCCGGGAGCGGAAAATCGACGCTCCTAAACGCGGTGGCAGGGAGGCTCTATGGACACGGCCTCACGGGAACAATCCTGGCGAACTCGAGCAAGCTTACCAAACCGGTTCTCCGGCGAACCGGTTTCGTCACGCAGGACGACATCCTCTACCCGCACCTAACCGTGCGCGAGACCCTCGTGTTCTGCGCCATGCTGCGGCTGCCGCGCGCGGCCCCGCGCGCGGAGAAGGTCGCGGCGGCGGAGTCGGCGATCGCCGAGCTAGGGCTGGGGAAGTGCGAGCACACCATAATCGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGCGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCCTCGCTCCTCATACTGGACGAGCCTACCTCCGGTCTGGACTCGACGGCGGCGCACCGCCTCGTGGTCACGCTGGCGGCGCTTGCGAAGAAGGGGAAGACGGTGGTTACGTCGCTGCACCAACCTTCGAGCCGTGTCTACCAGATGTTCGACAAGGTTCTGGTCCTGTCGGAAGGACAGTGTTTGTACTTCGGCAGAGGAAGCGACGCCATGCGGTACTTTCAGTCGGTTGGGTTCGCTCCGTCTTTTCCGATGAATCCGGCGGATTTTCTGCTCGATCTCGCCAACGGTGTTTGCCATGTCGATGGTCAAAGTGAAAGAGATAAACCAAACATAAAGCAGAACCTAATCAATTCATACAACACAGTACTGGGTCCCAAGGTAAAAGCTGCCTGCATGGACACTGCCACTGTTCCTACAAAGAACACACACCCTTTGAGAAGCAGCTCTTCAAAAGAATGCAGACGTAGCGACAAGGTTAGCTTCTTTGATTGGTTTTACCAATTCAGCATCCTGCTCCAGAGAAGCCTCAAAGAAAGAAAGCACGAATCCTTCAACACTCTGAGAGTCTTTCAAGTTATTGCTGCGGCACTATTAGCTGGTCTAATGTGGTGGCACTCAGAGTATAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTTTGGGGAGTCTTCCCGTCCTTCAACTCGGTGTTTGCATTCCCTCAAGAACGTGCCATCTTCATGAAAGAGCGAGCTTCTGGTATGTACACACTGTCCTCCTATTTCATGGCTAGAATTGTTGGAGACCTGCCCATGGAGCTTATTCTTCCCACGGTTTTCCTCATTGTGACATATTGGATGGGCGGATTAAAGCCTGATTTGTGGGCTTTTCTGTTGACTTTGTTGGTTGTGCTTGGATACGTGATGGTGTCACAGGGTCTTGGCCTTGCTTTAGGTGCAGCAATAATGGATGCCAAACAGGCTTCCGCAGTAGCAGCAGTGACAATGCTGGCTTTTGTGTTGACAGGTGGATACTATGTCCATAAGGTGCCACCTTGCATGGCTTGGATCAAATATATATCCACAACTTTCTACTCTTATAGCTTGCTGACTAGAATCCAGTATGGGGATGGCAAGAAGATATCATATTTATTGGGTTGCTATCATGGTCATGGAGGTAGTGATAGGGGTGGCTGTAAGTTTGTTGAAGAGGATGTGGTGGGGCAAATTGGCACTGTGGGATGCATTGGGGTGTTGCTTTTCATGTTTGTGTTCTACAGAGTGTTGGCCTACCTTGCCTTGAGGCGTATCAAGAGTTGA 2025 0.524 MPTPTPTAAFGGVETPNGDPSTTHAPPKHSLQESRGLPLFLSCSYPITLKFMDVAYRLKIEDKQRSGGCIKRLFTPHESSPSDQRSRVGAPQERTILKGVTGIAHPGEILAVLGPSGSGKSTLLNAVAGRLYGHGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRAAPRAEKVAAAESAIAELGLGKCEHTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLAALAKKGKTVVTSLHQPSSRVYQMFDKVLVLSEGQCLYFGRGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSERDKPNIKQNLINSYNTVLGPKVKAACMDTATVPTKNTHPLRSSSSKECRRSDKVSFFDWFYQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSEYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTVFLIVTYWMGGLKPDLWAFLLTLLVVLGYVMVSQGLGLALGAAIMDAKQASAVAAVTMLAFVLTGGYYVHKVPPCMAWIKYISTTFYSYSLLTRIQYGDGKKISYLLGCYHGHGGSDRGGCKFVEEDVVGQIGTVGCIGVLLFMFVFYRVLAYLALRRIKS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1001 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 23 672 - -
Ssu7g1001 674 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 320 IPR003439 GO:0005524
Ssu7g1001 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 313 IPR027417 -
Ssu7g1001 674 Pfam ABC transporter 97 248 IPR003439 GO:0005524
Ssu7g1001 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 672 - -
Ssu7g1001 674 SMART AAA_5 106 297 IPR003593 -
Ssu7g1001 674 MobiDBLite consensus disorder prediction 1 33 - -
Ssu7g1001 674 Gene3D - 86 314 IPR027417 -
Ssu7g1001 674 Pfam ABC-2 type transporter 277 378 IPR043926 GO:0140359
Ssu7g1001 674 Pfam ABC-2 type transporter 404 609 IPR013525 GO:0016020|GO:0140359
Ssu7g1001 674 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1001 Ssu-Chr7 22023083 22030465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1001 107 356 Calmodulin-binding Proteins AT2G36910 27.907 6.74e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1001 K05681 - gmx:100812367 1176.77