Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0999 atgtttctattatttttgctgCGTTTTCAAAACCCTAAATTGCAGAAATCCCaatttctccttctctctctctctgctttGCATGATTTCCAACAAAAAATTTGTGCTTTTGTGCTTTCCGAATCTTTTGCTCTGATGGGTACCTCGAATCTTCtcttgttcttcttctctttgaTGAGTCTGTGTGCTATGGCGGCTTCCAAGGTGGTGCTGATTGGGAACAACATTACTCTCTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAGGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCACTTGATGCGTGTACAGAACtgacaaataaaattgaacaacttcCCAACGTGAGTTCACCTTTCGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCACAAATGGCTGGCTTCAAAGCTGTAATTGTCTATGACAATGAAGACGGCGGTGTCTTGGTTGCAATGGCAGGAGATTCTGCTGGTATAAAAATACATGCTGTATTTGTATCAAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTTGACTAAAGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGgcaatttcatttatttcccTACTAGCTATGTCTGCGGTGCTCGCCACTTGTTTCTTTGTCCGCAGGCATCGTATAAGAAGAGAAAGGCCTCGAGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCGATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGCGTTGGTGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACATTTTGTCCTGTTTGCAAGCGTGATGCAAGGACCGGCTTAACTGATCTACCACCTTCAGAATCCACACCCTTGCTCTCATCAACCCCAGCATCTACGGCATCCTCTGTTTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGATGGCATCTATGGCATCCTCTGTCCTACCTTCTGCTAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCGCAGACCCCATCTGTTTCTCGTAACCACTCCATAGCTAGTACACCTTATGTTCAGCCATCTCTTAGGTCTTCCTACCATCAATCCCCCTCCCTAAGCATCAGCCGAAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACCTGAATTCACCACTTTCCATGGGATACCCATCCTTATCATCTCTCAACTCAAGGTACATGTCTCCACACATTCCAAGTCCAAGCAATGCTTCAAGTTATCTTGGTTCATCCAGTCATCAACAGCATCCTCTCCGGTATAGTGAGTCAGCTGCAAGCTTCACGCCATTTGCATCGACACACTCCCTTCCGGAAtgttaa 1545 0.4149 MFLLFLLRFQNPKLQKSQFLLLSLSALHDFQQKICAFVLSESFALMGTSNLLLFFFSLMSLCAMAASKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTELTNKIEQLPNVSSPFALVVRGGCSFEEKVRRAQMAGFKAVIVYDNEDGGVLVAMAGDSAGIKIHAVFVSKASGEILKKYAGLTKVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDLPPSESTPLLSSTPASTASSVLSSVRSSLASSSAIQIARMASMASSVLPSARSSLASSSAIQIARTASQTPSVSRNHSIASTPYVQPSLRSSYHQSPSLSISRSSVDLRNASQRSLASHLNSPLSMGYPSLSSLNSRYMSPHIPSPSNASSYLGSSSHQQHPLRYSESAASFTPFASTHSLPEC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0999 514 SMART ring_2 279 320 IPR001841 -
Ssu7g0999 514 ProSiteProfiles Zinc finger RING-type profile. 279 321 IPR001841 -
Ssu7g0999 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 326 IPR013083 -
Ssu7g0999 514 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 46 371 - -
Ssu7g0999 514 SUPERFAMILY RING/U-box 269 328 - -
Ssu7g0999 514 Pfam Ring finger domain 278 321 IPR001841 -
Ssu7g0999 514 SUPERFAMILY PA domain 121 188 IPR046450 -
Ssu7g0999 514 CDD PA_C_RZF_like 61 208 IPR044744 -
Ssu7g0999 514 Pfam PA domain 120 187 IPR003137 -
Ssu7g0999 514 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 371 449 - -
Ssu7g0999 514 Gene3D - 67 200 - -
Ssu7g0999 514 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 371 449 - -
Ssu7g0999 514 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 371 - -
Ssu7g0999 514 CDD mRING-H2-C3H2C2D_ZSWM2 278 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0999 Ssu-Chr7 21996985 22002562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0999 66 513 C3H Transcription Factor Family AT1G22670 46.916 2.10e-115 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0999 K15692 - gmx:100791248 776.548