Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0986 ATGGCAAGGGAAAAGATTCGGATTAAGAAGATTAACAACACCACAGCGAGGCAGGTCACGTTCTCAAAGCGTTGTAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTCCGATTCTGTGTGATGTTGATGTTGCCCTCATCATCTTCTCTTTTACTGGGAAGCTCTTTGAGTGCTCCAGCTCAAGGTATGTTACTGCAAGCATTCACCTTAAACAACCCAATtag 222 0.4459 MAREKIRIKKINNTTARQVTFSKRCRGLFKKAEELPILCDVDVALIIFSFTGKLFECSSSRYVTASIHLKQPN 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0986 73 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Ssu7g0986 73 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 SUPERFAMILY SRF-like 1 63 IPR036879 GO:0003677|GO:0046983
Ssu7g0986 73 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 61 - -
Ssu7g0986 73 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Ssu7g0986 73 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0986 Ssu-Chr7 21340014 21341555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0986 1 61 MADS-box Gene Family AT4G24540 83.607 4.43e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g0986 SRF-TF 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0986 - - bvg:104895505 100.523