Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0973 ATGGAAAACCTTCCACCATTGATCTACAAAAACCCCATTAGGAGAACCTCTAGGCGATCTACAATGTATCTAGGTGTCAGAAAAAGGCCATGGGGAAGATATGCTGTTGAGATTAGGAACCCATATACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCCATAGCTTATGATCTTTCATCTATCAAGATCTGTGGCATTCATAAtgctaaaactaattttcattaccCTTTTGTGTCTCTTCCACCACCTCCTATGTCATTGCCTCCTCCACCGCCACCACCCACCCCAGAGTTGGATCCAAGTGTTGGAGTTTGTCCAGAGATGAATGTTGTTTACGATGGTGATGATGAATCTCTGGTTATTGCCTCCATTTTGCAAAGCTTTTCTAATATTGGTAACtgttctttttag 429 0.4033 MENLPPLIYKNPIRRTSRRSTMYLGVRKRPWGRYAVEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGIHNAKTNFHYPFVSLPPPPMSLPPPPPPPTPELDPSVGVCPEMNVVYDGDDESLVIASILQSFSNIGNCSF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0973 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 133 - -
Ssu7g0973 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 133 - -
Ssu7g0973 142 Pfam AP2 domain 24 69 IPR001471 GO:0003700|GO:0006355
Ssu7g0973 142 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Ssu7g0973 142 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ssu7g0973 142 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ssu7g0973 142 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Ssu7g0973 142 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Ssu7g0973 142 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Ssu7g0973 142 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0973 Ssu-Chr7 21175280 21175708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0973 23 95 AP2-EREBP Transcription Factor Family AT1G12890 66.667 1.66e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g0973 AP2 7.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0973 - - gmx:100816937 228.409