Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0964 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCGGGAGGTTGGCCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGGCGAAATCTTCAGGGTTACGAAATTAATGGACGGCAATTACGTGTCGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAGAGAACAGGGTCGTGGTGGTCCTGGAATGACAACAAATGCTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGAGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACGGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAAACCTCACAGTCTTCAATGAATGAAAGCCAGCTGGGTCAACCATCATTGGTCCAAACTCTGTCTGGCCTTCCTCCTCATGGGCAGAGCAAGTTGCAGTCTGGTTTGACACCTTACGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGCCTCTTAATCAATTAACTGCACATCCAAGGCCTCCAGTGCAGCCTCGAATTCCTCTTCAACAACATCCAAACAACCTTATACTGCCAGGAACATTGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCTCCAGGTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCGGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACAACATCCTGCACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCTTCCATATCATCAGCTAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTCTGGAGGATTTAAATTGGGCCAAGAGAACTAATGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTACTCGCCCATCCAAGGTCATGAAATTGGATGAGGGAAGTAGCACCTCCCTTTCTGCAGGGATTTCGGAGATGCCTGTGACCGATGGATCATCTCATGTCCTTGGAAGAAGCTCATTACCTGTACATGCAGCACCTAAAGCAGAAGGGCAATACTCTGAGCAACAATCTTCTCAGCTTCCACCTGGTGTGGAGTCTGTTTTGCTGCAACAAGTTTTGAATCTGACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTTATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1656 0.462 MATSQSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNADPQKQVGGPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSSMNESQLGQPSLVQTLSGLPPHGQSKLQSGLTPYAQEGQVNTIPHNPLPLNQLTAHPRPPVQPRIPLQQHPNNLILPGTLSGQSNLMLPSVRPPGLGSLSVRPPIQPATSTALNQQMHASLLQHPAHVGNSTVGHNIQMVRPDANFQPGPSISSANSQLLSKGDKSSKVLEDLNWAKRTNAYSNMPLGVEKTNMVRDSSESFTRPSKVMKLDEGSSTSLSAGISEMPVTDGSSHVLGRSSLPVHAAPKAEGQYSEQQSSQLPPGVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0964 551 MobiDBLite consensus disorder prediction 385 408 - -
Ssu7g0964 551 MobiDBLite consensus disorder prediction 437 482 - -
Ssu7g0964 551 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Ssu7g0964 551 Gene3D - 151 232 - -
Ssu7g0964 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Ssu7g0964 551 MobiDBLite consensus disorder prediction 81 117 - -
Ssu7g0964 551 MobiDBLite consensus disorder prediction 438 471 - -
Ssu7g0964 551 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 546 - -
Ssu7g0964 551 Gene3D - 510 550 IPR038192 -
Ssu7g0964 551 MobiDBLite consensus disorder prediction 81 96 - -
Ssu7g0964 551 Gene3D - 1 118 IPR012677 -
Ssu7g0964 551 MobiDBLite consensus disorder prediction 391 408 - -
Ssu7g0964 551 SUPERFAMILY RNA-binding domain, RBD 5 108 IPR035979 GO:0003676
Ssu7g0964 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Ssu7g0964 551 Pfam Transcription termination and cleavage factor C-terminal 513 545 IPR026896 GO:0031124
Ssu7g0964 551 SMART rrm1_1 10 83 IPR000504 GO:0003723
Ssu7g0964 551 CDD RRM_CSTF2_CSTF2T 11 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0964 Ssu-Chr7 21006688 21018597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0964 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0964 K14407 - gmx:100806489 945.266