Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0962 ATGGGTGAGGCTTCGGAAGCTGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCCACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGAGTTGTGGGAAGAGGCTGAAGCTCAACGTGATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGATTTGCCTGGTCAATCTATACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAGTATCCTAATGGTGGAAGGTCTAACCGAGCAACCAGACGTGGGTACTGGAAAGCAACAGGAAAGGATCGTAATGTGACATGCAACTCTAGGTCGGTTGGAGTGAAAAAGACCCTGGTTTTCTATTTAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAGGATGTTAAGGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAAGAAGAGTGGGCAGATGATGGCATAGtagattttaatgataacaaagcTGATTGGGAGGCTCCAAATGATATTGCTGAAAATGTTAATGTACTGCAGCCTTTGCTTGATGATGAAATTGAAGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGACCAGCAGCATGTTAATGGTTATCCTTACTTTCCTCAGGTTGTTACAGAAGAAACACAAAGTACTGTTGTGGATCCGTTCTCTGAGTCTGTGATGTCCCCTGAGCCAAACAGAATCTTACATTCTAGCTGTCAGTTTTTTGATGCACAGCCCAGCTTTGACTTCAATCAGCCAGTTACTTCTCATTTGCATGTTTCTGAAGCATCTGAGGTCTCTTCTGCTTCGGCATTAAAACAAAGGGGCTTGACTTTCATGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATACTGAACCTTCATTGTCAAATGTGGAAAAGCCTGTGGAGTACCTGCAGTTTGAAGATGGGTTAA 1071 0.4295 MGEASEAGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKSCGKRLKLNVIRETDVYKWDPEDLPGQSILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKDRNVTCNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEEELKRCQDVKDYYALYKVYKKSGPGPKNGEQYGAPFNEEEWADDGIVDFNDNKADWEAPNDIAENVNVLQPLLDDEIEDIIREILDDELVLDQQHVNGYPYFPQVVTEETQSTVVDPFSESVMSPEPNRILHSSCQFFDAQPSFDFNQPVTSHLHVSEASEVSSASALKQRGLTFMRMASWKLMISLILNLHCQMWKSLWSTCSLKMG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0962 356 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Ssu7g0962 356 PANTHER NAC TRANSCRIPTION FACTORS 2 18 302 - -
Ssu7g0962 356 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Ssu7g0962 356 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Ssu7g0962 356 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Ssu7g0962 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0962 Ssu-Chr7 20979881 20982369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0962 12 264 NAC Transcription Factor Family AT1G34190 61.597 8.49e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g0962 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0962 - - gmx:100787232 559.681