Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0944 ATGGAAAACATTGCTCCCTATAGTGTTACCACTTTGTTATTTTCCTTGCTATTCTTCTGCCTCACCCTGACAAAGATAGGAGTCACTTGCCTCTCACCTGATGGACAAGCCCTTCTTTCTCTTCTGTCTGCAGCAGGTCCTGCTGCAAAATCGTCACCTTCTGTTCTCTCCTCATGGAACCCATCAAGCTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAgtcatttctctctctattcCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGATGCAACTTCTCAATCTCTCTTCCACCAATGTATCTGGCTCCATCCCACCCTCTTTTGGCCAACTCTCCCATCTTCTGCTGCTTGACCTCTCCTCAAACTCTCTCACCGGTTCCATACCTGCTGAACTTGGAAGGCTCTCCTCACTTCAGTTCCTTTTCTTGAACTTCAACAAATTGACAGGAAGCATTCCTCAACATCTTGCTAATCTTACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTTAATGGCTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGCAATCCATATCTCACCGGACAAATCCCATCACAGTTAGGCCTACTCACCAACCTCACCACTTTGGGTGCAGCTGCCACTGGACTTTCTGGAGCCATTCCCTCTACATTTGGTAACTTGATCAATCTGCAAACTCTAGCACTTTATGATACTGAAATCTCTGGTTCGATACCACCAGAAATTGGGTTGTGTTCTGAGCTGAGAAATCTGTACCTACACATGAATAAGCTCAGTGGCTCTATCCCTCCTCAATTGAGCAAGTTGCAAAAACTTACTAGCTTGCTACTTTGGGGCAATGCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGATCTTTCTGGTGAAATACCTGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCAGACAATTCACTCACAGGTAAAATACCATGGCAGTTGAGCAACTGCACGAGCCTTTCCACAGTTCAGTTTGACAAGAATCAGTTATCAGGTACTATTCCATGGGAGTTAGGCAAATTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGTAATTTAGTGTCTGGAACCATACCATCCTCTTTTGGAAACTGCACAGAACTCTATGCACTTGACCTTTCAAGGAACAAGCTGTCAGGTTCTATCCCAGAAGAGATTTTCAGCTTGAAGAAGCTTAGTAAGCTTCTGCTTCTGGGAAATTCATTAATAGGAAGGCTGCCATCAGGTGTTGCAAATTGCCATTCTTTGGTGAGGCTGAGGGTTGGAGAGAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTGGTGTTCCTTGACCTGTACATGAATCATTTCTCTGGAAGCATACCGGTGGAGATTGCCAATATCACAGTTCTTGAGCTGTTAGATGTGCACAACAATTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTTTGGAAATGTCAGCTATTTGGACAAGCTCATCCTCAATAATAACTTACTGACAGGATCAGTCCCAAAATCCATTAGAAATTTGCAGAAGCTAACTCTACTGGATTTGAGTTACAACAGCCTCTCTGGTGGCATTCCCCCTGAGATTGGTCATGTTACAAGCTTAACCATCAGTTTGGACTTAAGCTCGAACGCATTTACAGGAGAAATCCCAGACTCAGTGTCTGCTTTGACACAGTTGCAATCACTTGATCTTTCTCATAATATGCTTTACGGAGGAATTAAGGTTCTGGGGTCTCTCACTAGTCTGACTTCTCTTAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTGTCTTCTAATTCATATCTTCAGAACCCCCAGCTTTGTCAGTCCATTGATGGAACTACATGTTCTTCGAGTCTGATTCgaaaaaatggtttaaaatcTGCAAAAACCATTGCTGTGATCACAGTCATTCTAGCCTCGGTTACTATAATTCTCATTGCATCCTGGATTCTAGTAACTCGTAGTCATGGATACACGGTTGAGAAAACTTTGGGGGCATCAGCTTCCACACCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAATAAACTTCAGCATAGATAATATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGAGAGTTGATAGCTGTGAAGAAGCTATGGAAAGCAAGCAAAGCAGATGAAACCGTGGATTCTTTTGCTGCAGAGATTCAGATTCTTGGGTACATTCGACATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAACAGGAGTGTTAATCTTCTTCTCTATAACTACGTCCCAAATGGTAATCTGCGACAGCTTTTACAAGGGAACAGGAACTTAGACTGGGAAACAAGATACAAGATTGCTGTTGGATCAGCTCAAggtctagcttaccttcatcATGATTGTGTCCCTGCAATTCTCCATAGAGATGTCAAGTGCAATAACATACTTCTAGACTCCAAATTTGAGTCATATCTGGCAGATTTTGGTCTTGCAAAGCTAATGCATTCCCCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTCTGCTAGAGATACTAAGTGGGCGTAGTGCTGTTGAATCCCATGTTGGAGATGGCCAACACATAGTGGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGACACAAAGCTCCAAGGTCTACCAGATCAATTGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCAGCAGAGCGCCCCACAATGAAGGAAGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTCAAATCAAAGCTGA 3249 0.4278 MENIAPYSVTTLLFSLLFFCLTLTKIGVTCLSPDGQALLSLLSAAGPAAKSSPSVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMMQLLNLSSTNVSGSIPPSFGQLSHLLLLDLSSNSLTGSIPAELGRLSSLQFLFLNFNKLTGSIPQHLANLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPSQLGLLTNLTTLGAAATGLSGAIPSTFGNLINLQTLALYDTEISGSIPPEIGLCSELRNLYLHMNKLSGSIPPQLSKLQKLTSLLLWGNALTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLSTVQFDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLSGSIPEEIFSLKKLSKLLLLGNSLIGRLPSGVANCHSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNVSYLDKLILNNNLLTGSVPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSSNAFTGEIPDSVSALTQLQSLDLSHNMLYGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYLQNPQLCQSIDGTTCSSSLIRKNGLKSAKTIAVITVILASVTIILIASWILVTRSHGYTVEKTLGASASTPGAEDFSYPWTFIPFQKINFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADETVDSFAAEIQILGYIRHRNIVRLIGYCSNRSVNLLLYNYVPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFESYLADFGLAKLMHSPNYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQLVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSSNQS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0944 1082 SUPERFAMILY RNI-like 108 509 - -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 582 693 IPR032675 -
Ssu7g0944 1082 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Ssu7g0944 1082 Pfam Leucine rich repeat 394 452 IPR001611 GO:0005515
Ssu7g0944 1082 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Ssu7g0944 1082 SMART serkin_6 785 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0944 1082 Pfam Leucine Rich Repeat 537 558 IPR001611 GO:0005515
Ssu7g0944 1082 Pfam Leucine Rich Repeat 585 606 IPR001611 GO:0005515
Ssu7g0944 1082 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515
Ssu7g0944 1082 SUPERFAMILY Protein kinase-like (PK-like) 768 1057 IPR011009 -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 287 385 IPR032675 -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 386 480 IPR032675 -
Ssu7g0944 1082 Gene3D Transferase(Phosphotransferase) domain 1 863 1079 - -
Ssu7g0944 1082 MobiDBLite consensus disorder prediction 1063 1082 - -
Ssu7g0944 1082 Gene3D Phosphorylase Kinase; domain 1 764 862 - -
Ssu7g0944 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Ssu7g0944 1082 MobiDBLite consensus disorder prediction 1065 1082 - -
Ssu7g0944 1082 ProSiteProfiles Protein kinase domain profile. 785 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0944 1082 PANTHER UNNAMED PRODUCT 9 1078 - -
Ssu7g0944 1082 PRINTS Leucine-rich repeat signature 632 645 - -
Ssu7g0944 1082 PRINTS Leucine-rich repeat signature 538 551 - -
Ssu7g0944 1082 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Ssu7g0944 1082 Pfam Protein kinase domain 787 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0944 1082 SMART LRR_typ_2 415 439 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 343 367 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 632 659 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 174 198 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 126 150 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 247 271 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 583 607 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 535 558 IPR003591 -
Ssu7g0944 1082 SMART LRR_typ_2 295 319 IPR003591 -
Ssu7g0944 1082 PANTHER - 9 1078 - -
Ssu7g0944 1082 SUPERFAMILY L domain-like 439 694 - -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 191 286 IPR032675 -
Ssu7g0944 1082 Gene3D Ribonuclease Inhibitor 481 578 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0944 Ssu-Chr7 20710294 20713750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0944 28 1076 Receptor kinase-like Gene Family AT5G56040 45.532 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu7g0944 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0944 - - ccaj:109812175 1901.33