Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0940 atgccGGAATCGGAGACGGGGACGCCGACGGCGGCGTCGGTGCCGGCGACGCCGGACACTCCGGGAGGACCACTATTCACGTCGCTGCGAGTTGACTCACTGTCACACGAGCGTGACTCGTTCGCAAAGGCTCGGTGCAAGTGTTTGCCAACCAAGGGCCACACCTGCCTCACTGATTTCTCTGTTGGTGTTCCACTTCCCAATGTTTCTCTCACTCAAAAGGTTGGAGCAGAGTTTGTGGGGACCTTCATATTGATATTTGCAGCAGCGGCTGGACCCATAGTGAACAACAAGTACAATGGAGCAGAGACTCTGATGGGAAATGCAGCTTCTGCAGGGTTAACAGTGATGTTCATTATTCTCTCTATTGGCCACATCTCAGGTGCACACCTCAACCCATCCCTCACCATTGCCTTTGCGGCCTTCCGCCATTTCCCTTGGACCCATGTCCCAGCTTACATAGCAGCACAAGTCTCTGCCTCAATCTGTGCCAGTTATGCCCTCAAAGGTGTTTATCACCCTTTTCTCTCTGGTGGGGTCACTGTCCCTTCTGTCAGCGTTGGCCAAGCTTTTGCAACTGAGTTTATAATCACTTTTAATCTCATGTTTGTGGTCACTGCTGTTGCCACTGATACTCGTGCGGTTGGTGAATTGGCAGGAATTGCTGTTGGGGCTACAGTTTTGCTCAATATTCTCATTTCAGGGCCAACAAGTGGGGGTTCGATGAATCCGGTGCGCACATTGGGTCCAGCCGTTGCTGCAGgaaattacaagcatatatggATCTATATGGTGGCTCCAACGCTGGGTGCTCTCGTTGGTGCTGGCGTTTATACGCTGGTCAAGCTGCGTGACAACGAGGCTGAACCCCCGCGACAAGTTAGGAGCTTCCGTCGCTAG 900 0.5156 MPESETGTPTAASVPATPDTPGGPLFTSLRVDSLSHERDSFAKARCKCLPTKGHTCLTDFSVGVPLPNVSLTQKVGAEFVGTFILIFAAAAGPIVNNKYNGAETLMGNAASAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICASYALKGVYHPFLSGGVTVPSVSVGQAFATEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYMVAPTLGALVGAGVYTLVKLRDNEAEPPRQVRSFRR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0940 299 PANTHER AQUAPORIN NIP2-1 10 297 IPR034294 -
Ssu7g0940 299 CDD MIP 73 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PANTHER AQUAPORIN NIP5-1-RELATED 10 297 - -
Ssu7g0940 299 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g0940 299 MobiDBLite consensus disorder prediction 1 15 - -
Ssu7g0940 299 Pfam Major intrinsic protein 69 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 Gene3D Glycerol uptake facilitator protein. 66 294 IPR023271 -
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g0940 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Ssu7g0940 299 SUPERFAMILY Aquaporin-like 70 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0940 Ssu-Chr7 20568289 20577245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0940 25 299 Major Intrinsic Protein MIP AT4G10380 74.733 9.30e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0940 K09874 - gmx:100804356 558.91