Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0938 ATGACCTCCAAACCTCCCCACCCAGATTCCATTGATGCATTGAAGTCTAAAATGTCTGTTCAAAAGGATCCAGAGAAGTTCTTCATGTCCATCACCGAAGGAGAGAAAAAGCCATTTGACTTCTTACGCGTTCTATATGATGGTTGCATTGCTGGTGGTGTTGCTGGTGTCGTTGTTGAAACAGTTTTATATCCCATTGATACCATCAAAACTCGACTACAGGTTGCTCGTGATGGAGGGAAAATTGTTTTGAAGGGTCTGTACTCTGGATTGTCTGGAAATCTTGTTGGTGTCTTAccAGCTTCAGCAATTTTTATTGGTGTTTATGAGCCTACAAAGCAGCAATTGCTAAAGTCTTTGCCTGAGAATCTCAGTGCTGTGGCTCATTTTGCTGCAGGTGCTGTTGGAGGAGTTGCTTCTTCTCTTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATGCAAATTGGTCAATTTAGATCAGCCCCGGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTATAGAATTATGCATTTACGAGCAGCTCCGTATCGGGTATAAACTGGTGGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAGGGATCACAAAACCATTACAAAGGCATTAGTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTTTTTTCAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGAggttcaatatttttttgtgttcttGAGAAGACAAAGCAAATTCTTGCTCAGAGGCGGCACCCTAAAGCTGAGACTCAGAAATGA 945 0.4138 MTSKPPHPDSIDALKSKMSVQKDPEKFFMSITEGEKKPFDFLRVLYDGCIAGGVAGVVVETVLYPIDTIKTRLQVARDGGKIVLKGLYSGLSGNLVGVLPASAIFIGVYEPTKQQLLKSLPENLSAVAHFAAGAVGGVASSLVRVPTEVVKQRMQIGQFRSAPDAVRLIVANEGFKGLYAGYGSFLLRDLPFDAIELCIYEQLRIGYKLVAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGISDCVRTIVKEEGTHAFFKGIGPRVLWIGVGGSIFFCVLEKTKQILAQRRHPKAETQK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0938 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 42 115 IPR018108 -
Ssu7g0938 314 Pfam Mitochondrial carrier protein 219 304 IPR018108 -
Ssu7g0938 314 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Ssu7g0938 314 Pfam Mitochondrial carrier protein 48 118 IPR018108 -
Ssu7g0938 314 SUPERFAMILY Mitochondrial carrier 49 296 IPR023395 -
Ssu7g0938 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Ssu7g0938 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Ssu7g0938 314 PRINTS Mitochondrial carrier protein signature 274 292 IPR002067 GO:0055085
Ssu7g0938 314 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Ssu7g0938 314 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Ssu7g0938 314 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Ssu7g0938 314 PRINTS Mitochondrial carrier protein signature 181 201 IPR002067 GO:0055085
Ssu7g0938 314 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 312 - -
Ssu7g0938 314 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 12 312 - -
Ssu7g0938 314 Gene3D Mitochondrial carrier domain 46 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0938 Ssu-Chr7 20496972 20506781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0938 132 304 Chloroplast and Mitochondria Gene Families AT2G30160 29.834 1.31e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0938 K15111 - gmx:100800051 512.686