Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0926 ATGGAACACCCCTTCCAAGCCATCGTCGCCGCCATCGGCAGCTTCTTCGTCGTGACCCTCCTCCTCGCCGGCGCCATCATCCTCTGCCAGCACCGCAAGTCCAGCAAAACCCGCAGCCGCGGCAACCAGATCCGAACCCGGCCCGCTCCCCAGCGCGACGCCTCCCTCTCGCTCGCCGTCGTGGACGCGAGCTGGTCCTCCGACCCGAACCTCATCAAGATCTCGTGGGAGGAGCTCTCACGCGCCACGGACAACTTCTCCCCGCACCTGATCGTCGGCGACGGCAGCTTCGGCCTCGTCTACAGGGCCCGCCTCTCCACCGGCGCCCTCGTGGCCGTCAAGAAGCTCTCCCCGGACGCCTTCCAGGGCTTCCGCGAGTTCACGGCGGAGATGGAGACCCTAAGCAAGCTCCGCCACCCCAACATCGTGAAGATCCTCGGCTACTGGGCCTCCGGCCCGGAACGCCTCCTCGTCTACGAGTTCATCGAGAGGGGAAACCTCGACCAGTGGCTCCACGAAAACGACGACGGCTCGCGCTCCCCCTTGTCCTGGGAAACCCGGGTCCACATCATCCGTGGCGTGGCCCACGGGCTCTGCTACCTCCACGAGCTCGACAAGGCCATCATCCACCGCGACATCAAGGCCAGCAACGTCTTGCTGGACTCCAAGTTCCAGGCCCATATTGCTGACTTTGGGCTCGCGCGCCGGATCGACAACTCGCACTCCCACGTGTCCACGCAGTTCGCGGGCACCATCGGGTACATGCCCCCCGAGTACAGGGATGGGTCTAATGTGGCCAACAAGAAGGTGGACGTCTACAGTTTTGGGGTCTTGATGATTGAAACCATGTCGAGTCACCGGCCCAATTTGCCCATGAAGTTGGGCCAGGACGACATTGGGATAGTCCAGTGGGCCAGGAAGATGAAGGAGCAAAACGCGGAGATGGAGATGGTTGATGTGAATATTTCCAGGGAAGGGTTGAGGGAGGAGAGTGTGAACGAGTACGTGCGCATCGCTTGTGAGTGCACGGGTGAGTTGCAGAAGGAAAGGCCCCTAATGCCCGAAGTTGTCAAGTGGTTGGACTCGATGCCGCTTTGA 1098 0.6184 MEHPFQAIVAAIGSFFVVTLLLAGAIILCQHRKSSKTRSRGNQIRTRPAPQRDASLSLAVVDASWSSDPNLIKISWEELSRATDNFSPHLIVGDGSFGLVYRARLSTGALVAVKKLSPDAFQGFREFTAEMETLSKLRHPNIVKILGYWASGPERLLVYEFIERGNLDQWLHENDDGSRSPLSWETRVHIIRGVAHGLCYLHELDKAIIHRDIKASNVLLDSKFQAHIADFGLARRIDNSHSHVSTQFAGTIGYMPPEYRDGSNVANKKVDVYSFGVLMIETMSSHRPNLPMKLGQDDIGIVQWARKMKEQNAEMEMVDVNISREGLREESVNEYVRIACECTGELQKERPLMPEVVKWLDSMPL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0926 365 ProSiteProfiles Protein kinase domain profile. 86 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0926 365 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 362 - -
Ssu7g0926 365 SMART serkin_6 86 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0926 365 Gene3D Transferase(Phosphotransferase) domain 1 162 363 - -
Ssu7g0926 365 Pfam Protein kinase domain 91 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0926 365 SUPERFAMILY Protein kinase-like (PK-like) 67 360 IPR011009 -
Ssu7g0926 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Ssu7g0926 365 PANTHER OS01G0253100 PROTEIN 1 362 IPR045271 GO:0004714|GO:0006468
Ssu7g0926 365 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Ssu7g0926 365 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Ssu7g0926 365 CDD STKc_IRAK 92 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0926 Ssu-Chr7 20277116 20278213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0926 71 360 Receptor kinase-like Gene Family AT5G07280 44.674 4.54e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu7g0926 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0926 - - gmx:100802728 614.379