Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0925 atgGATCCTCATACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAATTTTTCATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGATATGATGCTGATGACCCTGACAGTGCATGTACGGATAGCTGCCTGAATGTATTAACCAGCACCGAATGCACCCCTGGTTATTGCCATTGTGATATCTTATGCAGAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGATGGCCGTGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCTGGACAATTTGTCATTGAATACTGTGGGGAAGTAATATCATGGAAAGAAGCCAAGCGTAGATCCCAGGCTTATGAAATTCAAGGTCTTAAAGATGCATTTATCATTTGCCTTAATGCGTCTGAATCTATTGATGCAACCAGAAAAGGCAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGtgagacaagaaaatggaatgTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTGgcttatgattataattttgaatggTTTGGAGGTGCAAAGGTTCGTTGCCTCTGTGGTGCACTCAAATGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTGTGGGAAGATGATGATGAcagGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAACACTCTTTGGATGTTATGCTTAAAGCTGAGCAATTATCGGAGTCCACTGCTTTCCATGTTCAACCACTTGATTTAGTTCAGATGAAAGGTTTAGATGTCAAGAAGATTAAAACTGATCTAGCGGAGGAGGATATGAACTTGTACTCCCAAGATACTGAACAGACCCTATCACAAAAGAATGCAATGATTTCACGAATCCGAAGTAATACTGCAGGCAGAAACTATCGCATTGGACCTAGGTCCATCTCTAACAAAAGATCAAGGGCATATAATGGTGGAAGGTTTAAAAATCTCATAGAGAAGAAAATTGATGCAAAGTTTGCAGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGAAAAGGAAGGATGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAGGAACATGAGAGGGATAGCCAAGACAGTGTATCCACGACTGTGGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCGGAATTCGACCTTTACTCGTCAATTGTCAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGTCCAAGTAAAACCTACTGAAGTAGATAACGAAAACGAAATTAAGCTCTTGACAGGTTGA 1446 0.3942 MDPHTEELPQYIHINQNEFFMRRHKKQKEEDIAICECRYDADDPDSACTDSCLNVLTSTECTPGYCHCDILCRNQKFQKCEYAKTKLFKTDGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTEHSLDVMLKAEQLSESTAFHVQPLDLVQMKGLDVKKIKTDLAEEDMNLYSQDTEQTLSQKNAMISRIRSNTAGRNYRIGPRSISNKRSRAYNGGRFKNLIEKKIDAKFAAGLLASKEAQEEILNCEKRKDDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPVQVKPTEVDNENEIKLLTG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0925 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Ssu7g0925 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Ssu7g0925 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Ssu7g0925 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Ssu7g0925 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Ssu7g0925 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Ssu7g0925 481 SMART set_7 83 206 IPR001214 GO:0005515
Ssu7g0925 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Ssu7g0925 481 Coils Coil 381 401 - -
Ssu7g0925 481 PANTHER SET DOMAIN PROTEINS 4 420 - -
Ssu7g0925 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 4 420 - -
Ssu7g0925 481 Gene3D SET domain 1 235 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0925 Ssu-Chr7 20264096 20274271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0925 65 222 C2H2 Transcription Factor Family AT2G23740 34.254 3.76e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu7g0925 SET 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0925 - - gmx:100804657 912.524