Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0889 atGGGAGCAATTACGAGTCGACATGACCGAAACGCCAACCCCCAAAGTCAAACTCCACCACAGAGTATTAAGGAGCCGTGTTCATCTGCTGCGAGCCGCATCAGTTCCCTGAACCGTGAATCCCTTTTGTTCAACATGGTACTTCATTATGATGTTTCCctctcttccttctttttcacccTTATGTCCCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTGGATGGGAAGCAGAACATAATGTTCGCTCTTACCTCAATCAAAGGTATAGGGAGGCGATTTGCTAACATTGTCTGCAAGAAGGCTGATGTTGACATGAACAAAAGAGCTGGTGAGCTGAGTGCTGCTGAGTTGGATAATCTCATGACTGTGGTTGCCAACCCCCGGCAATTCAAGATTCCGGACTGGTTTTTGAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGACGACTTGGAGAGACTCAAGAAAATCAGGAACCATCGAGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTCTCTAAAAAGCGCTGA 642 0.4579 MGAITSRHDRNANPQSQTPPQSIKEPCSSAASRISSLNRESLLFNMVLHYDVSLSSFFFTLMSLVANEDFQHILRVLNTNVDGKQNIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0889 213 Gene3D - 62 141 - -
Ssu7g0889 213 ProSiteProfiles Ribosomal protein S13 family profile. 76 206 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu7g0889 213 Pfam Ribosomal protein S13/S18 75 203 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu7g0889 213 SUPERFAMILY S13-like H2TH domain 74 213 IPR010979 GO:0003676
Ssu7g0889 213 Gene3D 30s ribosomal protein s13, domain 2 153 203 IPR027437 -
Ssu7g0889 213 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 60 213 - -
Ssu7g0889 213 MobiDBLite consensus disorder prediction 1 26 - -
Ssu7g0889 213 MobiDBLite consensus disorder prediction 8 26 - -
Ssu7g0889 213 ProSitePatterns Ribosomal protein S13 signature. 182 195 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu7g0889 213 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 60 213 - -
Ssu7g0889 213 Hamap 30S ribosomal protein S13 [rpsM]. 73 213 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0889 Ssu-Chr7 18465584 18468781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0889 62 213 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.053 8.31e-109 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0889 K02964 - qsu:112019340 298.516