Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0885 ATGATGATAAAATTTGatcattctctctctccctctttctctctctctatatatgtgtgtaggAAACTAGCAGAACTGGGTTACCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGCAGGAGTGGCAAACACGAGGGAAAAGCCTACAAGTTTTATGATCAATTACAAGCCCTTGAGAACCAGTTCCCAGTGTCTTACCCGCCAAAACCACAACCCACTTTGGCAACAACAAACACAGTGGCATTACCACCCCCACCAAGGCCTAGTGACACAACAGCAATCTCTTATGTCACCACCACTGTTCCATCCACAAACCCTACAGTCATATCTCCTTCGCCGCCACCACCGACCAATGCCACCACAACCCCCACCATCACTTCTCCAACAGTAGTAACCAACCCTAGAAACCCTCCacaacccaacaacaacaacaacaataacatccCTTACTCTTTGCCCAACATGAATAACCTCTTCTCAACCACttcaacctcttcttccacGGCCTCAGATGAAGACCTGGAAGAGAAGTACCGGAAGAAGAGAAAGTGGAAGGACTACTTCCGGAGGCTCACGAGGCAAGTCCTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCCTGGAAGCCGTAGACAAAAGGGAGAGAGAACACGTGGCACAACAAGAGGCTTGGAGGATGCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTTCAAGAAAGATCAACTGCGGCAGCAAAAAATGCAGCAGTTATTGCCTTTTTGCAACAGTTATCATCTGGTCAGCACCAAAATCCCACAACACAAGCTGGTGCCAATTTCTTTCAACAACCACCACCCCCTCCACAAGTATCACAAGTACAACCACCACAAACGCCATTGATGAtgtcaaataataacaataacagtaTTGAAATTCAGAAAATGACTAATGGTCACAGTGCTGGGACTGCTATTGCTGCTGTTACTGCTATTACTACTACTCCATTGAGCTCTTTATCTTCTTCTAGGTGGCCGAAGGCAGAAGTTCAGGCTTTGATAAGGATGAGGACGAGTCTTGAAGCTAAGTACCAAGAAAATGGACCAAAGGCTCCACTGTGGGAGGATATATCGGCGGGGATGTTGAGGCTCGGGTACAGCAGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTCAGGGAAAGCAACAAGCAAAGGCGTGAGGATAGTAAGACATGTCCCTATTTTCATGAACTTGATGTTTTATACAAAGAAAAGAGCAAAACTCAGAACCCCTTTGGTGCTTCATTCCACAACATGAAGCCACATGAGATGATGGAGCCCTTGAGGGTGCAACCGGAGCAGCAATGGAGACCTCCCTCTCAATATGAACAAGGTGCAGTGAAGGAGAATAATGAAAGTcaatatgaaagaaaagaaagagaggaggaagaggaagaagaagaagacgatGATAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1620 0.413 MMIKFDHSLSPSFSLSIYVCRKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKHEGKAYKFYDQLQALENQFPVSYPPKPQPTLATTNTVALPPPPRPSDTTAISYVTTTVPSTNPTVISPSPPPPTNATTTPTITSPTVVTNPRNPPQPNNNNNNNIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAVDKREREHVAQQEAWRMQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSSGQHQNPTTQAGANFFQQPPPPPQVSQVQPPQTPLMMSNNNNNSIEIQKMTNGHSAGTAIAAVTAITTTPLSSLSSSRWPKAEVQALIRMRTSLEAKYQENGPKAPLWEDISAGMLRLGYSRSAKRCKEKWENINKYFKKVRESNKQRREDSKTCPYFHELDVLYKEKSKTQNPFGASFHNMKPHEMMEPLRVQPEQQWRPPSQYEQGAVKENNESQYERKEREEEEEEEEDDDNEEGDLESVEDEGGSRYEIATNKLSSVDTVE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0885 539 Coils Coil 483 520 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 120 134 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 469 539 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 471 486 - -
Ssu7g0885 539 Pfam Myb/SANT-like DNA-binding domain 19 71 IPR044822 -
Ssu7g0885 539 Pfam Myb/SANT-like DNA-binding domain 351 437 IPR044822 -
Ssu7g0885 539 PRINTS Proline rich extensin signature 117 129 - -
Ssu7g0885 539 PRINTS Proline rich extensin signature 129 150 - -
Ssu7g0885 539 PRINTS Proline rich extensin signature 75 87 - -
Ssu7g0885 539 PRINTS Proline rich extensin signature 286 298 - -
Ssu7g0885 539 PRINTS Proline rich extensin signature 96 112 - -
Ssu7g0885 539 SMART sant 349 411 IPR001005 -
Ssu7g0885 539 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 19 529 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 496 517 - -
Ssu7g0885 539 PANTHER - 19 529 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 115 191 - -
Ssu7g0885 539 Gene3D - 353 414 - -
Ssu7g0885 539 Gene3D - 17 48 - -
Ssu7g0885 539 MobiDBLite consensus disorder prediction 135 182 - -
Ssu7g0885 539 CDD GT1 352 416 - -
Ssu7g0885 539 ProSiteProfiles Myb-like domain profile. 345 409 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0885 Ssu-Chr7 18339272 18340891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0885 19 473 Trihelix Transcription Factor Family AT1G76880 44.130 8.93e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g0885 Myb_DNA-bind_4 5.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0885 - - gmx:100799041 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0885 7 18339272 18340891 Ssu7g0885 7 18339272 18340891 PCT