Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0884 ATGCTCGGGGATTCGGCTGTGTCGGGAGCAGGAGGAggtggcggcggcggaggagAAGGCGGTGTCTCCGGCGATGCAGTGGCGGCGGTAGCGCATGACGGGGCGGTGGCGGTGACAGGAGACGGTGGCGGCGTTGGATCAAATTCGGGGGACGATGAAAGGGGTAGAATCGAAGAGGGTGAACGTAGCTTCGGTGGTAACCGCTGGCCACGACAAGAGACTTTGGCGTTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCAGAGAAGCTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTCTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGCAAAACATATCGTTTCTTTGATCAATTAGAAGCCCTTGAGAACCACACTCCAACACCTCATTCCCCCAACCCATCACCAAAACCACCACAATCAGCAGTAGCACCATCAAGAATAGTAGCAACAACAACTGCATCAGTGCCACTCCCAAttgtaacaacaacaacaacaacaactgcATCATCAGTGTCACTACCaattccaacaacaacaacaacagtgcCAATGCAGCCAGTAGTACTGTCCAACACCACTCTCACTAGTGTCCCCCATATCACTGTTCCATCAACAACACCACTCCCTATTACCATACCTCAACCCATCCTTACCACCCCATCGATAAACCTCACAACCCCTTCTTACCCTCCACCAAACCCTACGAATTTCCCACCACCATCCACAGCAAACCCTACCACCCACACAACCTCTTTCCCCACCGACACCTTCTCCAATTTCAGCTCCTCCTCCACCTCCTCCGATGAAACACTGGAAGGAAGGCGCAAGAGAAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGAGCTGCAAAAGAGGTTCTTGGAAGCCATAGAGAAACGCGAACACGACAGAATTGCAAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAATAGCGAAAGAGCAATCCTAGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTAATGTCATTCCTACAAAAAATAGCCGAACAACAGAATCTCGGTCAAGCACTGAGTAACATCAACCTCGTACAACCACaaccgccgccgccgccgccgccacaTCAACAGCCAAGTGTAGCACCACCTCCGGTGCAACAACCACCGCCCGTGGTTGTTGCACAGCCGGTGGTGCTACCAGTGGTTCCACAACCACAACAAGTGACGAATATGGAGATAGTGAAAGctgataataacaacaacaataataatagggaGAATTTCATGCCATCGAGTTCTTCGAGGTGGCCAAAAGTGGAGGTTCAGGCGTTGATAAAGCTTCGAACGACCCTGGATGCAAAGTATCAAGAGAATGGACCAAAAGGTCCCCTGTGGGAGGAGATCTCAGCCTCAATGAGGAAGCTGGGGTACAACCGAAACGCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAAGAAAGCAACAAGAGGAGACCCGAGGACTCCAAAACATGCCCTTACTTCCACCAGCTGGACGCGCTGTACAGGGAGAGGAGCAAGGCCGAGAGCGCCGCGGCGGCGAAGGCGGAGACAGCGGCGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGCAGGAGACCATGAGGGACAGGGACATCACAATGGAGGACGCGGAGAACGAAGATGATGAGTATGAAGAAGAGAGAGAcggagaggaagaagaagaagaagatgatgatgaagaagaagaagacgaaGAAGGTGGTGGTGGGAACTATGAGATAGTGGCAAACAAAGCATCAGCTGAGTAG 1965 0.4682 MLGDSAVSGAGGGGGGGGEGGVSGDAVAAVAHDGAVAVTGDGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLEALENHTPTPHSPNPSPKPPQSAVAPSRIVATTTASVPLPIVTTTTTTTASSVSLPIPTTTTTVPMQPVVLSNTTLTSVPHITVPSTTPLPITIPQPILTTPSINLTTPSYPPPNPTNFPPPSTANPTTHTTSFPTDTFSNFSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHDRIAREEAWRVQEMQRINSERAILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNINLVQPQPPPPPPPHQQPSVAPPPVQQPPPVVVAQPVVLPVVPQPQQVTNMEIVKADNNNNNNNRENFMPSSSSRWPKVEVQALIKLRTTLDAKYQENGPKGPLWEEISASMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRERSKAESAAAAKAETAAAPLMVRPEQQWPPQQETMRDRDITMEDAENEDDEYEEERDGEEEEEEDDDEEEEDEEGGGGNYEIVANKASAE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0884 654 Coils Coil 314 341 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g0884 654 Gene3D - 69 130 - -
Ssu7g0884 654 Gene3D - 477 538 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 573 654 - -
Ssu7g0884 654 CDD GT1 475 540 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 155 176 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 274 300 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 259 273 - -
Ssu7g0884 654 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Ssu7g0884 654 Pfam Myb/SANT-like DNA-binding domain 475 562 IPR044822 -
Ssu7g0884 654 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Ssu7g0884 654 ProSiteProfiles Myb-like domain profile. 475 533 IPR001005 -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 405 429 - -
Ssu7g0884 654 SMART sant 473 535 IPR001005 -
Ssu7g0884 654 SMART sant 65 127 IPR001005 -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 402 429 - -
Ssu7g0884 654 Coils Coil 599 629 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 37 68 - -
Ssu7g0884 654 CDD GT1 67 132 - -
Ssu7g0884 654 PANTHER - 24 649 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 259 309 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 51 66 - -
Ssu7g0884 654 MobiDBLite consensus disorder prediction 607 641 - -
Ssu7g0884 654 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 24 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0884 Ssu-Chr7 18290768 18293661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0884 65 598 Trihelix Transcription Factor Family AT1G76890 48.689 6.51e-150 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g0884 Myb_DNA-bind_4 2.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0884 - - pvu:PHAVU_007G079700g 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0884 7 18290768 18293661 Ssu7g0884 7 18290768 18293661 PCT